PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | mrna16655.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 1752aa MW: 197143 Da PI: 7.9869 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.2 | 1.9e-13 | 774 | 819 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l mrna16655.1-v1.0-hybrid 774 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 819 78*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 31.1 | 5.4e-10 | 848 | 890 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l mrna16655.1-v1.0-hybrid 848 EWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 890 6*****************99.********8..**********9986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.80.10.10 | 3.3E-10 | 52 | 95 | IPR032675 | Leucine-rich repeat domain, L domain-like |
PROSITE profile | PS50181 | 8.597 | 52 | 100 | IPR001810 | F-box domain |
SuperFamily | SSF81383 | 6.54E-10 | 52 | 95 | IPR001810 | F-box domain |
SMART | SM00256 | 0.0073 | 58 | 98 | IPR001810 | F-box domain |
Gene3D | G3DSA:3.80.10.10 | 3.3E-10 | 168 | 432 | IPR032675 | Leucine-rich repeat domain, L domain-like |
SuperFamily | SSF52047 | 2.35E-7 | 207 | 408 | No hit | No description |
Pfam | PF08387 | 3.1E-6 | 430 | 473 | IPR006566 | FBD domain |
Pfam | PF11833 | 5.1E-10 | 571 | 686 | IPR021788 | Protein CHAPERONE-LIKE PROTEIN OF POR1-like |
PROSITE profile | PS51294 | 22.008 | 768 | 823 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.37E-13 | 769 | 825 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.6E-16 | 771 | 825 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.0E-15 | 772 | 821 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-11 | 774 | 819 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.57E-12 | 776 | 819 | No hit | No description |
PROSITE profile | PS51294 | 14.131 | 843 | 894 | IPR017930 | Myb domain |
SMART | SM00717 | 6.9E-11 | 845 | 892 | IPR001005 | SANT/Myb domain |
CDD | cd11659 | 1.15E-27 | 847 | 893 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.8E-10 | 848 | 891 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 9.33E-11 | 848 | 896 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 1.1E-8 | 849 | 898 | No hit | No description |
Pfam | PF11831 | 7.7E-58 | 1203 | 1444 | IPR021786 | Pre-mRNA splicing factor component Cdc5p/Cef1 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009870 | Biological Process | defense response signaling pathway, resistance gene-dependent | ||||
GO:0010204 | Biological Process | defense response signaling pathway, resistance gene-independent | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1752 aa Download sequence Send to blast |
MMKNRACRTS QFLPTKKHEK RSKLKKKENL GKKQRDKGEF SSGNRNGGVS YEDRISDLPD 60 GILLSILSCL LLKEAATTSV LSRRWRDLWA SVMSLNFEDE KNSRDFKEVK PNIQHRQRRS 120 FVSMVDAAVK QHTGLTIERF RACFFLDRRF AQSIDEWIEF AVKKRVQILE LEFSTANYKD 180 NYTFPHELLG LAKGSTQKDL HSGISSLHSS GCCLGFKSLK VLTLRHVNVA GEALENLLMN 240 CPVERLSVVA AKNLVDLRVV SPPITWKYLA IEKCLDLKTI EICNADIVSF TYIGVGIDLV 300 LSNVPLLTEV SITELEIRSN DFYNSIAISV ELPFTQLSCY LSQLKCLTMD ISEVVYNQDY 360 VFPMLANLKC LELICEPHYA SALRYLTSFM KASPYLQRLV LKMNIYTSWL EEMGIGKTEM 420 EEIVTTKQLE SVAKCPHDEL KVIEIVGYRA RRFAAKHVML LLKNAVALKK LVIDPVRHRS 480 RGLSMVKEII DEEMKARNHA VKHLKKYVPS TFPQRNFRPK APPLSFSPPN FRAIPQNRRI 540 VLAAASAAGS SNSDSGLNPY EILGVNPIEG FDKVKETYKR KHKEAMSNGD EEGAATLEKA 600 YDKLMMSQLT NRKKGMTFGS FKVSKDIKYA DKQPIVPWGP RFTKSSGQDI RINLAISAVF 660 VAWIAIVRNA DYKPLQFLSF AFVYRIFEKL KSFEGPVTPK YTEDGEEVGK GLQMGKRLLR 720 ALGLVFGCIA VASLGYTGSL NVIEYMASYV PAILYNNQLP SGDVVKMRIM IKGGVWKNTE 780 DEILKAAVMK YGKNQWARIS SLLVRKSAKQ CKARWYEWLD PSIKKIAMCG LLGLGPCSVG 840 VFGFDLTEWT REEDEKLLHL AKLMPTQWRT IAPIVGRTPS QCLERYEKLL DAACVKDENY 900 EPGDDPRKLR PGEIDPNPES KPARPDPVDM DEDEKEMLSE ARARLANTRG KKAKRKAREK 960 QLEEARRLAS LQKRRELKAA GIDTRQRKRK RKGIDYNAEI PFEKKPPPGF YDVAEEDRPV 1020 EQPQFPTTIE ELEGKRRVDV EAQLRKQDIA KNKIAQRQDA PSAILQANKL NDPETVRKRS 1080 KLMLPAPQIS DHELEEIAKM GYANDLAGSE LTEGSGATRA LLANYAQTPR LGMTPLRTPQ 1140 RTPSGKGDAI MMEASNLAML RESQTPLLGG ENPQLHPSDF SGVTPRKKEI QTPNLMLTPS 1200 MLTPSTPGGA GLTPRFGLTP SRDALGMTPK GTPMRDELRI NEDVDMHDSA KMEHRRQAEL 1260 RKNLQLGLSN LPQPKNEYQI VMQPVPEDDE EPEEKIEEDM SDRIARERAE EEARQQALLR 1320 KRSKVLQREL PRPPATSVES LRKSLLRADE DKSKVVPPTS IEQANEMITK ELLSLLEHDN 1380 AKYPLDEKTD KRKKKGSKRS TNGSTSAVPE IDDFEEDELK EADSMINDEV KYLRVAMGHE 1440 DKSVDEFVEV HKTCMNEFMF FPKRNAYGSS SIAGNEEKLE ALQNEFDNVK KKLDDDLAKA 1500 VSLEKKVKVR THGYEMRAKD THWPKIEETF KQLDTAEKEL ECFRALQKQE QLAASHRINN 1560 LWEEVQKQKE LERTLQKRYG GLLLEVERVQ HLREKYIAQE QEQKEVAARN DLELADAAVD 1620 VTVAQSTGNL DSTSASDELA ASHGETTDPQ VDGMDVDADK KCDMTVTTDV DVPKNTPSVA 1680 EGEKDIPSQG TSGEGSETHL STSDGIPSSD VAAQESVSNG DAVSGSVAKV LPTENLTRTT 1740 VADDQVVGAE I* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5mqf_L | 0.0 | 768 | 1590 | 3 | 799 | Cell division cycle 5-like protein |
5xjc_L | 0.0 | 768 | 1590 | 3 | 799 | Cell division cycle 5-like protein |
5yzg_L | 0.0 | 768 | 1590 | 3 | 799 | Cell division cycle 5-like protein |
5z56_L | 0.0 | 768 | 1590 | 3 | 799 | Cell division cycle 5-like protein |
5z57_L | 0.0 | 768 | 1590 | 3 | 799 | Cell division cycle 5-like protein |
5z58_L | 0.0 | 768 | 1590 | 3 | 799 | Cell division cycle 5-like protein |
6ff4_L | 0.0 | 768 | 1590 | 3 | 799 | Cell division cycle 5-like protein |
6ff7_L | 0.0 | 768 | 1590 | 3 | 799 | Cell division cycle 5-like protein |
6icz_L | 0.0 | 768 | 1590 | 3 | 799 | Cell division cycle 5-like protein |
6id0_L | 0.0 | 768 | 1590 | 3 | 799 | Cell division cycle 5-like protein |
6id1_L | 0.0 | 768 | 1590 | 3 | 799 | Cell division cycle 5-like protein |
6qdv_O | 0.0 | 768 | 1590 | 3 | 799 | Cell division cycle 5-like protein |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 19 | 25 | KRSKLKK |
2 | 972 | 991 | KRRELKAAGIDTRQRKRKRK |
3 | 986 | 991 | RKRKRK |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00028 | SELEX | Transfer from AT1G09770 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | mrna16655.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004302089.1 | 0.0 | PREDICTED: cell division cycle 5-like protein | ||||
TrEMBL | A0A2P6R5K1 | 0.0 | A0A2P6R5K1_ROSCH; Putative transcription factor MYB-HB-like family | ||||
STRING | XP_004302089.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4072 | 33 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G09770.1 | 0.0 | cell division cycle 5 |
Link Out ? help Back to Top | |
---|---|
Phytozome | mrna16655.1-v1.0-hybrid |