PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna16564.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 378aa    MW: 40832.8 Da    PI: 6.8562
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna16564.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH314.4e-10225269554
                              HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                              h+++Er RR+ri +++  L+el+P++      K + a++L + v+Y+k L
  mrna16564.1-v1.0-hybrid 225 HSIAERLRRERIAERMKALQELVPSC-----NKTDRAAMLDEIVDYVKFL 269
                              99***********************8.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-15218279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.53E-11218274No hitNo description
PROSITE profilePS5088816.526220269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-15222280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-7225269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.6E-12226275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MAGNPPEGLG DDFFEQIMAV PQPYSGGSAS AADSGRGYGD VGSMPMVLQL GSGTGSSSGY  60
RGGGGSVGMG MGMPLGLNLE QGFLGHDRFR DEVERNSNTN NSNNNNNGNS SSERDNSVHM  120
TTSLFPAAFG HLQNHSSVRP TPPPPPQPHQ VFYKMVKGIV DSFQQTRAWF LQEVVCFYTR  180
WSERGVNACP QFHSQPAPAP TAAVHQPPAI RPRVRARRGQ ATDPHSIAER LRRERIAERM  240
KALQELVPSC NKTDRAAMLD EIVDYVKFLR LQVKVLSMSR LGGAGAVAQL VADVPLSAVE  300
GEGIEGGTNN QQAWEKWSND GTEQQVAKLM EEDVGAAMQY LQSKALCIMP ISLAPAIFRT  360
HQPDTTTMVK PESHNSS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1229234RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna16564.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011465955.10.0PREDICTED: transcription factor UNE12 isoform X2
SwissprotO227686e-84UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A314YM141e-159A0A314YM14_PRUYE; Transcription factor UNE12-like isoform X2
STRINGXP_004302053.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112053239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.32e-61bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]