PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna16523.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family CPP
Protein Properties Length: 1248aa    MW: 137913 Da    PI: 6.4217
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna16523.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR45.31.8e-149721010240
                      TCR    2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40  
                                +k+CnC++skClk+YCeCfaag +C e C+C +C+Nk+
  mrna16523.1-v1.0-hybrid  972 ACKRCNCRRSKCLKLYCECFAAGLYCVEPCSCFNCFNKS 1010
                               689**********************************97 PP
2TCR47.82.9e-1510641103140
                      TCR    1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40  
                               ++k+gCnCkks+ClkkYC Cf+ g+ Cs +CkC +CkN+ 
  mrna16523.1-v1.0-hybrid 1064 RHKRGCNCKKSSCLKKYCVCFQGGAGCSLQCKCVGCKNTF 1103
                               589***********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.1280.501.1E-62268No hitNo description
SuperFamilySSF813837.33E-102278IPR001810F-box domain
PROSITE profilePS501819.0742271IPR001810F-box domain
PfamPF006463.9E-82569IPR001810F-box domain
SMARTSM002565.6E-42868IPR001810F-box domain
SMARTSM011141.1E-169711012IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163433.8349721104IPR005172CRC domain
PfamPF036387.4E-109741009IPR005172CRC domain
SMARTSM011147.2E-1610641105IPR033467Tesmin/TSO1-like CXC domain
PfamPF036384.0E-1110661102IPR005172CRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1248 aa     Download sequence    Send to blast
MGDVTTSKRS KALSSESVAA PEDLIDELPE CLLVDILCRL PRNTVVQCKR VSKSWLTLIS  60
KPCFHAHFLS LQKHNPPFET TLMFVRTSAL EIQSFTIPLK HTRVSNVLKF SHIYNVVAGT  120
CNDLVLWCAT PMFQIRCYYI SNPYTNHCVP LPLAPQCHQA HVVVGLICDS YHRCKVVRIL  180
ECEEESALFM VEIFSSETSE WTQAVVPFPQ GLTYDDIRSS VNNVGLACNG TLYWLVSSGL  240
VIGLDPSQFD NSCIPSAATV PANHNFHYSF ISKPDVDAGL SASSSCEQCL TVFRGRLSLC  300
QFYNEGPPSP ILYVWDLKED DHEMDGVGRK SVKWCLKEKI VLDELIASLY WKPLAFHPND  360
EDKLYALCYY PRNNAKKCFI CEYNIRKSGR SAIRISEIPL QNRVDAFPLL IPGVRLPTPV  420
PGLDSISTAM SLGQQINDSH SQLNSSHLRQ EIEQMAEQKE IQVPKESPVS NFISNLSPIE  480
PIKFIRNDHT FNSLSFASPP SGFTPPHIVS PCRNKLLQKR HHFSEAWEPG ISRSCNLNST  540
SDGDSIVSEQ LECSVIGDLV PAESLELAAE LPSTLKLSCG SPESNVVPFD ATKADGTPES  600
VVQSYIHQPK GGHSSSEREA HLLRICRAGF DWEMSVSDAD DLLNFDFEII EENSAEEDPK  660
TGDPGVMSFV SNILVDNHND VEIRHTADPM GSSEQFALKK FSNSETEYFV SKTVDGGTVS  720
FILDNLQENH NGKELVETVG PIDSSEQCES EKFSTSEPIW DLMEIEQAPS ILSRPLLDLN  780
VNPSNTVDVK RHKCTPPSCK PSSQSHTIHR RCLVFDKAET HKRKLVSDSS GTCSVSMRSN  840
CEAPTVVKEL IQTTTGMVCA FSSARLPGIG LHLNALATPC ETNLTVKTLA SESQVMSMPD  900
SKTCYTTITP GEDSRDESLI LNYSEDESVA CKNGAHLAES TLQTCKHTFE ESEHSSPKRK  960
SVETKHVGES RACKRCNCRR SKCLKLYCEC FAAGLYCVEP CSCFNCFNKS IHVEIVHETR  1020
RLIELRNPLA FAPRVVGSAE AVSQFVTPNI PMQEETKSTP TSARHKRGCN CKKSSCLKKY  1080
CVCFQGGAGC SLQCKCVGCK NTFGQKGGQR LSGGLGSEDT EVEGESGVHE KNDPMILSEI  1140
CRSPPDQLPT TDLNRTSEQI SLHSSQSSSP RLEKHLQAIP EEETFEALDR PKTSQPSSIC  1200
VKSASPNSKR VSPPHSHNSI GKFGSLKSWK GGRKLTLRSV PLPFTNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-1597011018120Protein lin-54 homolog
5fd3_B3e-1597011018120Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna16523.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004304737.10.0PREDICTED: protein tesmin/TSO1-like CXC 2
RefseqXP_011465933.10.0PREDICTED: protein tesmin/TSO1-like CXC 2
RefseqXP_011465934.10.0PREDICTED: protein tesmin/TSO1-like CXC 2
RefseqXP_011465935.10.0PREDICTED: protein tesmin/TSO1-like CXC 2
TrEMBLA0A251NZQ10.0A0A251NZQ1_PRUPE; Uncharacterized protein
STRINGXP_004304737.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26193375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.14e-68Tesmin/TSO1-like CXC domain-containing protein