PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna16491.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family M-type_MADS
Protein Properties Length: 166aa    MW: 18944.5 Da    PI: 6.5501
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna16491.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF47.32.6e-15957149
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                             k+i++k   ++tf+kRr+g++ KA+E ++ ++a++a+i fs+ ++ +++
  mrna16491.1-v1.0-hybrid  9 KKISSKNALKTTFTKRRQGLFRKANEFCTRTGAQIAIITFSPADRPFTF 57
                             6899**************************************9987777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.0E-20160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.507161IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-8323IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-19472IPR002100Transcription factor, MADS-box
CDDcd002663.05E-21470No hitNo description
PfamPF003193.4E-181057IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-82338IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-83859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MGLRRTEMKK ISSKNALKTT FTKRRQGLFR KANEFCTRTG AQIAIITFSP ADRPFTFGHP  60
SEDSVIDRYY NPGKQVLEEN GGHGSVIDEK DENVKFWSDK PIEAMGLGEL KELARLVEDE  120
IEETKMREAC TKDLLGLNWK GDDPKLDDEM KIRESRTKDF LANWV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna16491.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004304725.21e-120PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A2P6R6795e-86A0A2P6R679_ROSCH; Putative transcription factor MADS-type1 family
STRINGXP_004304725.11e-114(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-25AGAMOUS-like 61