PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna16389.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

FAR1

Protein Properties

Length: 436aa MW: 48179.4 Da PI: 8.6982

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna16389.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	51.2	4.2e-16	69	136	1	70
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkk 70 +fY++YA+ +GF vr +s++sk+++e+++r+f+C+++g+ +e +e+r r + r +Cka++ v + mrna16389.1-v1.0-hybrid 69 DFYKKYASAAGFIVRLGSSRRSKKTTEFIRREFYCNRQGHGPSELVG--DEKRIRGVVREDCKARMIVVR 136 6*************************************9999877..89999**********9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.7E-13	69	135	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 436 aa Download sequence Send to blast
MEIETTEMSV PMELDINEML VAEEPKTDPI QVVHPSKENI STSAFYPQVR NELKPFKGQQ 60 FTTWEEAHDF YKKYASAAGF IVRLGSSRRS KKTTEFIRRE FYCNRQGHGP SELVGDEKRI 120 RGVVREDCKA RMIVVRIKPL LANSNSDGVE PLSKKSSTQE STFREPDEVR TKGRAKRIKR 180 GKEKSKGKRN GTGRHCHGCG KDGQTHDKRN CPVLLERLPS ADTNENSSGD GTDDSYSSQL 240 LRAIHYLWSP SVSQTRPGEM KAAMTISDAE QYSLLGEGNH KLSKGNLRYG WKLLRPLLLH 300 SNQALSCSWS SLLQEGRAKG PDVQAILAGT DLKVELNTGI PSLEHSGQIS RVDLSSLKAL 360 DSFASSSIVD YNSMELQQFA AKDLFSAIIQ GLALESNAFI SADLAGHCRA IDIYICDRHP 420 APKGGSALTS LHQTA*

Sequence ? help Back to Top

Protein Sequence Length: 436 aa Download sequence Send to blast

MEIETTEMSV PMELDINEML VAEEPKTDPI QVVHPSKENI STSAFYPQVR NELKPFKGQQ  60
FTTWEEAHDF YKKYASAAGF IVRLGSSRRS KKTTEFIRRE FYCNRQGHGP SELVGDEKRI  120
RGVVREDCKA RMIVVRIKPL LANSNSDGVE PLSKKSSTQE STFREPDEVR TKGRAKRIKR  180
GKEKSKGKRN GTGRHCHGCG KDGQTHDKRN CPVLLERLPS ADTNENSSGD GTDDSYSSQL  240
LRAIHYLWSP SVSQTRPGEM KAAMTISDAE QYSLLGEGNH KLSKGNLRYG WKLLRPLLLH  300
SNQALSCSWS SLLQEGRAKG PDVQAILAGT DLKVELNTGI PSLEHSGQIS RVDLSSLKAL  360
DSFASSSIVD YNSMELQQFA AKDLFSAIIQ GLALESNAFI SADLAGHCRA IDIYICDRHP  420
APKGGSALTS LHQTA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna16389.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	1e-11	FAR1 family protein

Link Out ? help Back to Top
Phytozome	mrna16389.1-v1.0-hybrid