PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna16350.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 357aa    MW: 39556.1 Da    PI: 6.4465
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna16350.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.45e-20157206255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               y+GVr+++ +g+WvAeIr p++   r+r +lg+f taeeAa a+++a+ kl+g
  mrna16350.1-v1.0-hybrid 157 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFETAEEAALAYDKAAYKLRG 206
                              59******9.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.16E-33156216No hitNo description
SuperFamilySSF541715.17E-23157215IPR016177DNA-binding domain
SMARTSM003802.2E-37157220IPR001471AP2/ERF domain
PROSITE profilePS5103223.077157214IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-32157215IPR001471AP2/ERF domain
PRINTSPR003674.5E-11158169IPR001471AP2/ERF domain
PfamPF008471.2E-13158206IPR001471AP2/ERF domain
PRINTSPR003674.5E-11180196IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MAAAIDTYSS SSSMAPDLSE ELMRALMPYM KSSSISSISP PTSPSTSSSS SASYTPFYSS  60
SHPNLHPDFC SNTQMFSQVG FEQTGSLGLN QLTPSQIHQI QTQMILQQHH QQQQKQQIAA  120
LAPLPNQYHH QNTHTLNFLA PKAVPMKQSS TPKPTKLYRG VRQRHWGKWV AEIRLPKNRT  180
RLWLGTFETA EEAALAYDKA AYKLRGDFAR LNFPHLKHQG AHISGDFGNY KPLHAAVDAK  240
LEAICESLAV NAPKQTKTEE LCSETETKPV ISAQKMVFDD ALSTERTELK TEWDFPKLEA  300
FSSSSSPSRS CDESSAGSSS PESDIPFLDF SDSQWAENDT FGLEKYPSVE IDWSAI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-22156214160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A4e-22156214463ATERF1
3gcc_A4e-22156214463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna16350.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004288218.10.0PREDICTED: ethylene-responsive transcription factor RAP2-4-like
SwissprotQ8H1E48e-88RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A3S8T9140.0A0A3S8T914_FRAAN; Transcription factor ERF4
STRINGXP_004288218.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105732109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.11e-61related to AP2 4
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  4. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  5. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]