PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna16294.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | CAMTA | ||||||||
Protein Properties | Length: 1087aa MW: 123101 Da PI: 8.17 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 164.5 | 1.9e-51 | 20 | 136 | 2 | 118 |
CG-1 2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYah 87 l+ ++rwl++ ei++iL n++k++l++e++++p+ g+l Ly+rk++r frkDGy+wk+ kdgk+v+E+he+LKvggvevl+cyYah mrna16294.1-v1.0-hybrid 20 LQAHHRWLHPAEICQILRNHTKFRLSEEHADTPEGGTLSLYDRKVLRSFRKDGYKWKRTKDGKAVKEAHERLKVGGVEVLHCYYAH 105 6789********************************************************************************** PP CG-1 88 seenptfqrrcywlLeeelekivlvhylevk 118 +een++fqrrcyw++e++l++ivlvhy++vk mrna16294.1-v1.0-hybrid 106 GEENENFQRRCYWMIEKRLSHIVLVHYRDVK 136 ****************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 70.682 | 15 | 141 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 4.3E-65 | 18 | 136 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 3.6E-45 | 22 | 135 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 6.1E-4 | 271 | 357 | IPR013783 | Immunoglobulin-like fold |
SuperFamily | SSF81296 | 2.08E-16 | 271 | 357 | IPR014756 | Immunoglobulin E-set |
CDD | cd00204 | 3.89E-8 | 458 | 561 | No hit | No description |
PROSITE profile | PS50297 | 10.577 | 459 | 520 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 1.1E-10 | 463 | 566 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 6.63E-12 | 469 | 562 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50096 | 8.535 | 694 | 718 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1087 aa Download sequence Send to blast |
MAARKRLRPD DQLEIPQILL QAHHRWLHPA EICQILRNHT KFRLSEEHAD TPEGGTLSLY 60 DRKVLRSFRK DGYKWKRTKD GKAVKEAHER LKVGGVEVLH CYYAHGEENE NFQRRCYWMI 120 EKRLSHIVLV HYRDVKTSEG NLSCSSELSI NRNVHLDISY HASTSFPRGV NADELLNSLG 180 PPCHMDLIKQ NESSLHRHSD NKNDPWRLKN LDSSNQCMNT NLGDQTEPHM SSSEDHSNTI 240 ASENGIDGFS ALKQVEIATL GSSLFQDLLF NIMDFSPNWA YERSETKVVV VGRFLKSQEL 300 DSFSWSCMFG EVEVPAEVVA DGVLRCHTPI HRAARIPFYV TCSNRLACSE VKIFEYRVNH 360 IQDADFKDNC CKENTLVMRF GKLLSPSVMY PSFNPRVKHR QYDPICVSDN SDLTRKISSL 420 LKNGDEERAE MLKLFPDAFS LDTVKEQLLQ QFLKDKFHEW LLKKLAVGGN GLRVLDEGGQ 480 GVLHFGAALG YDWVLSPMKI AGVSINFRDV NGWTALHWAA FCGSLGGAPG ALTDPCTKNP 540 TGKTPADLAS ENGYKGIAGY LAASSLSAHI SSLKLDIKDA HSAESSREKS VQPDGMSAHC 600 SNGDLADELS MRVCSTAVCD HIQASARIHQ VFSVQPFQRK QLKEYGDKSK TSDEGALSLS 660 AVKSHKKCDQ HVSCAAIQTP DKFRNRNIKD FLIIRSRILK IQANVRGHQE RKSYTKILWA 720 VGILEKIILR WRRKRSGLRG FKREPPSDEG RSIQVSSSRE NDYDFLKEGR KQTEERLQNA 780 LARVKSMVQI PEARDQYNQL SNIFTEIQET KVVDSSEGES TDMDYNGMLQ VVNNSVGISA 840 DMDYNIIDTN ALLDDNICIT ARSSIQSFPM LTKFFLSILD PCITRNKIDH SSVVNLLSAS 900 SQVKDFDIFS GFLRILSDIY FELGDLPFSF MNLKTLRIRG GIKQRYIPGL ACLLKSSPVV 960 HTLEIMFSEE DGKWNNKSMD DANCTQEQYW ESQVQYLSPF LSHLNVAEIC LDKMIPESAI 1020 TFAKFVLKYG KNMQKMRTTL QENASRRFVY APAKPRPQKD DKVPYKRGVM SKFPFMAFLM 1080 LTFPQP* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3'. Binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance in association with CAMTA1 and CAMTA2 (PubMed:23581962). Required for the cold-induced expression of DREB1B/CBF1, DREB1C/CBF2, ZAT12 and GOLS3 (PubMed:19270186). Involved in response to cold. Contributes together with CAMTA5 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). Involved together with CAMTA2 and CAMTA4 in the positive regulation of a general stress response (GSR) (PubMed:25039701). Involved in the regulation of GSR amplitude downstream of MEKK1 (PubMed:25157030). Involved in the regulation of a set of genes involved in defense responses against pathogens (PubMed:18298954). Involved in the regulation of both basal resistance and systemic acquired resistance (SAR) (PubMed:21900483). Acts as negative regulator of plant immunity (PubMed:19122675, PubMed:21900483, PubMed:22345509, PubMed:28407487). Binds to the promoter of the defense-related gene EDS1 and represses its expression (PubMed:19122675). Binds to the promoter of the defense-related gene NDR1 and represses its expression (PubMed:22345509). Involved in defense against insects (PubMed:23072934, PubMed:22371088). Required for tolerance to the generalist herbivore Trichoplusia ni, and contributes to the positive regulation of genes associated with glucosinolate metabolism (PubMed:23072934). Required for tolerance to Bradysia impatiens larvae. Mediates herbivore-induced wound response (PubMed:22371088). Required for wound-induced jasmonate accumulation (PubMed:23072934, PubMed:22371088). Involved in the regulation of ethylene-induced senescence by binding to the promoter of the senescence-inducer gene EIN3 and repressing its expression (PubMed:22345509). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:18298954, ECO:0000269|PubMed:19122675, ECO:0000269|PubMed:19270186, ECO:0000269|PubMed:21900483, ECO:0000269|PubMed:22345509, ECO:0000269|PubMed:22371088, ECO:0000269|PubMed:23072934, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25157030, ECO:0000269|PubMed:28351986, ECO:0000269|PubMed:28407487, ECO:0000305|PubMed:11925432}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna16294.1-v1.0-hybrid |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, salt, wounding, ethylene and methyl jasmonate (PubMed:11162426, PubMed:12218065). Induced by infection with the fungal pathogen Golovinomyces cichoracearum (powdery mildew) and the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000 (PubMed:22345509). {ECO:0000269|PubMed:11162426, ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:22345509}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011465502.1 | 0.0 | PREDICTED: calmodulin-binding transcription activator 3-like | ||||
Swissprot | Q8GSA7 | 1e-175 | CMTA3_ARATH; Calmodulin-binding transcription activator 3 | ||||
TrEMBL | M5W6N0 | 0.0 | M5W6N0_PRUPE; Uncharacterized protein | ||||
STRING | XP_004289313.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8284 | 27 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22300.2 | 1e-172 | signal responsive 1 |
Link Out ? help Back to Top | |
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Phytozome | mrna16294.1-v1.0-hybrid |