PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna16294.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family CAMTA
Protein Properties Length: 1087aa    MW: 123101 Da    PI: 8.17
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna16294.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1164.51.9e-51201362118
                     CG-1   2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYah 87 
                              l+ ++rwl++ ei++iL n++k++l++e++++p+ g+l Ly+rk++r frkDGy+wk+ kdgk+v+E+he+LKvggvevl+cyYah
  mrna16294.1-v1.0-hybrid  20 LQAHHRWLHPAEICQILRNHTKFRLSEEHADTPEGGTLSLYDRKVLRSFRKDGYKWKRTKDGKAVKEAHERLKVGGVEVLHCYYAH 105
                              6789********************************************************************************** PP

                     CG-1  88 seenptfqrrcywlLeeelekivlvhylevk 118
                              +een++fqrrcyw++e++l++ivlvhy++vk
  mrna16294.1-v1.0-hybrid 106 GEENENFQRRCYWMIEKRLSHIVLVHYRDVK 136
                              ****************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143770.68215141IPR005559CG-1 DNA-binding domain
SMARTSM010764.3E-6518136IPR005559CG-1 DNA-binding domain
PfamPF038593.6E-4522135IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.106.1E-4271357IPR013783Immunoglobulin-like fold
SuperFamilySSF812962.08E-16271357IPR014756Immunoglobulin E-set
CDDcd002043.89E-8458561No hitNo description
PROSITE profilePS5029710.577459520IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.1E-10463566IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484036.63E-12469562IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500968.535694718IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1087 aa     Download sequence    Send to blast
MAARKRLRPD DQLEIPQILL QAHHRWLHPA EICQILRNHT KFRLSEEHAD TPEGGTLSLY  60
DRKVLRSFRK DGYKWKRTKD GKAVKEAHER LKVGGVEVLH CYYAHGEENE NFQRRCYWMI  120
EKRLSHIVLV HYRDVKTSEG NLSCSSELSI NRNVHLDISY HASTSFPRGV NADELLNSLG  180
PPCHMDLIKQ NESSLHRHSD NKNDPWRLKN LDSSNQCMNT NLGDQTEPHM SSSEDHSNTI  240
ASENGIDGFS ALKQVEIATL GSSLFQDLLF NIMDFSPNWA YERSETKVVV VGRFLKSQEL  300
DSFSWSCMFG EVEVPAEVVA DGVLRCHTPI HRAARIPFYV TCSNRLACSE VKIFEYRVNH  360
IQDADFKDNC CKENTLVMRF GKLLSPSVMY PSFNPRVKHR QYDPICVSDN SDLTRKISSL  420
LKNGDEERAE MLKLFPDAFS LDTVKEQLLQ QFLKDKFHEW LLKKLAVGGN GLRVLDEGGQ  480
GVLHFGAALG YDWVLSPMKI AGVSINFRDV NGWTALHWAA FCGSLGGAPG ALTDPCTKNP  540
TGKTPADLAS ENGYKGIAGY LAASSLSAHI SSLKLDIKDA HSAESSREKS VQPDGMSAHC  600
SNGDLADELS MRVCSTAVCD HIQASARIHQ VFSVQPFQRK QLKEYGDKSK TSDEGALSLS  660
AVKSHKKCDQ HVSCAAIQTP DKFRNRNIKD FLIIRSRILK IQANVRGHQE RKSYTKILWA  720
VGILEKIILR WRRKRSGLRG FKREPPSDEG RSIQVSSSRE NDYDFLKEGR KQTEERLQNA  780
LARVKSMVQI PEARDQYNQL SNIFTEIQET KVVDSSEGES TDMDYNGMLQ VVNNSVGISA  840
DMDYNIIDTN ALLDDNICIT ARSSIQSFPM LTKFFLSILD PCITRNKIDH SSVVNLLSAS  900
SQVKDFDIFS GFLRILSDIY FELGDLPFSF MNLKTLRIRG GIKQRYIPGL ACLLKSSPVV  960
HTLEIMFSEE DGKWNNKSMD DANCTQEQYW ESQVQYLSPF LSHLNVAEIC LDKMIPESAI  1020
TFAKFVLKYG KNMQKMRTTL QENASRRFVY APAKPRPQKD DKVPYKRGVM SKFPFMAFLM  1080
LTFPQP*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3'. Binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance in association with CAMTA1 and CAMTA2 (PubMed:23581962). Required for the cold-induced expression of DREB1B/CBF1, DREB1C/CBF2, ZAT12 and GOLS3 (PubMed:19270186). Involved in response to cold. Contributes together with CAMTA5 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). Involved together with CAMTA2 and CAMTA4 in the positive regulation of a general stress response (GSR) (PubMed:25039701). Involved in the regulation of GSR amplitude downstream of MEKK1 (PubMed:25157030). Involved in the regulation of a set of genes involved in defense responses against pathogens (PubMed:18298954). Involved in the regulation of both basal resistance and systemic acquired resistance (SAR) (PubMed:21900483). Acts as negative regulator of plant immunity (PubMed:19122675, PubMed:21900483, PubMed:22345509, PubMed:28407487). Binds to the promoter of the defense-related gene EDS1 and represses its expression (PubMed:19122675). Binds to the promoter of the defense-related gene NDR1 and represses its expression (PubMed:22345509). Involved in defense against insects (PubMed:23072934, PubMed:22371088). Required for tolerance to the generalist herbivore Trichoplusia ni, and contributes to the positive regulation of genes associated with glucosinolate metabolism (PubMed:23072934). Required for tolerance to Bradysia impatiens larvae. Mediates herbivore-induced wound response (PubMed:22371088). Required for wound-induced jasmonate accumulation (PubMed:23072934, PubMed:22371088). Involved in the regulation of ethylene-induced senescence by binding to the promoter of the senescence-inducer gene EIN3 and repressing its expression (PubMed:22345509). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:18298954, ECO:0000269|PubMed:19122675, ECO:0000269|PubMed:19270186, ECO:0000269|PubMed:21900483, ECO:0000269|PubMed:22345509, ECO:0000269|PubMed:22371088, ECO:0000269|PubMed:23072934, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25157030, ECO:0000269|PubMed:28351986, ECO:0000269|PubMed:28407487, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna16294.1-v1.0-hybrid
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene and methyl jasmonate (PubMed:11162426, PubMed:12218065). Induced by infection with the fungal pathogen Golovinomyces cichoracearum (powdery mildew) and the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000 (PubMed:22345509). {ECO:0000269|PubMed:11162426, ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:22345509}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011465502.10.0PREDICTED: calmodulin-binding transcription activator 3-like
SwissprotQ8GSA71e-175CMTA3_ARATH; Calmodulin-binding transcription activator 3
TrEMBLM5W6N00.0M5W6N0_PRUPE; Uncharacterized protein
STRINGXP_004289313.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82842735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.21e-172signal responsive 1
Publications ? help Back to Top
  1. Zhang L,Du L,Shen C,Yang Y,Poovaiah BW
    Regulation of plant immunity through ubiquitin-mediated modulation of Ca(2+) -calmodulin-AtSR1/CAMTA3 signaling.
    Plant J., 2014. 78(2): p. 269-81
    [PMID:24528504]
  2. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  3. Rahman H,Yang J,Xu YP,Munyampundu JP,Cai XZ
    Phylogeny of Plant CAMTAs and Role of AtCAMTAs in Nonhost Resistance to Xanthomonas oryzae pv. oryzae.
    Front Plant Sci, 2016. 7: p. 177
    [PMID:26973658]
  4. Benn G, et al.
    Plastidial metabolite MEcPP induces a transcriptionally centered stress-response hub via the transcription factor CAMTA3.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(31): p. 8855-60
    [PMID:27432993]
  5. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]
  6. Lolle S, et al.
    Matching NLR Immune Receptors to Autoimmunity in camta3 Mutants Using Antimorphic NLR Alleles.
    Cell Host Microbe, 2017. 21(4): p. 518-529.e4
    [PMID:28407487]
  7. Kim YS, et al.
    CAMTA-Mediated Regulation of Salicylic Acid Immunity Pathway Genes in Arabidopsis Exposed to Low Temperature and Pathogen Infection.
    Plant Cell, 2017. 29(10): p. 2465-2477
    [PMID:28982964]
  8. Jacob F, et al.
    A dominant-interfering camta3 mutation compromises primary transcriptional outputs mediated by both cell surface and intracellular immune receptors in Arabidopsis thaliana.
    New Phytol., 2018. 217(4): p. 1667-1680
    [PMID:29226970]