PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna16287.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | MYB | ||||||||
Protein Properties | Length: 350aa MW: 38797.6 Da PI: 6.1611 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.3 | 8.5e-19 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l ++++++G g+W++ ++ g++R++k+c++rw +yl mrna16287.1-v1.0-hybrid 14 KGPWTPEEDQKLMNYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 55.8 | 1e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE++ +++++ lG++ W++Ia++++ gRt++++k++w+++l mrna16287.1-v1.0-hybrid 67 RGKFSQEEEQTILNLHSILGNK-WSAIASHLP-GRTDNEIKNFWNTHL 112 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.6E-27 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.129 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.45E-32 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.8E-15 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.6E-18 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.55E-12 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.744 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.4E-28 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.6E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-16 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.49E-13 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root | ||||
PO:0007134 | developmental stage | sporophyte vegetative stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MGRSPCCDDS GLKKGPWTPE EDQKLMNYIQ KHGHGSWRAL PKLAGLNRCG KSCRLRWTNY 60 LRPDIKRGKF SQEEEQTILN LHSILGNKWS AIASHLPGRT DNEIKNFWNT HLKKKLIQMG 120 FDPMTHRPRT DIFSSLPHLL ALVNLKELID QGSSQASWDE QALRLQAEAA QMAKIQYLQY 180 LIQPQVSTSN NLSDFTDIET IGLLNSLCSS IKDVNPVFGS SRLETSAQYL GSSSVQDSIP 240 FSPLPDLQIV PSSAYQKDMI INQAQDQFTV LSQMDNSPNN VSWNIPSSSN TSTPSPPPLA 300 VPPVTETSTS NNNMGDTCST TTSSYGGVAT NSVWSDLLLE DYPFFNEIS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-31 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00180 | DAP | Transfer from AT1G34670 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna16287.1-v1.0-hybrid |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004288189.1 | 0.0 | PREDICTED: transcription factor MYB28-like | ||||
Swissprot | Q9S9Z2 | 1e-109 | MYB93_ARATH; Transcription factor MYB93 | ||||
TrEMBL | A0A2P6RQD4 | 0.0 | A0A2P6RQD4_ROSCH; Putative transcription factor MYB-HB-like family | ||||
STRING | XP_004288189.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF402 | 34 | 172 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34670.1 | 1e-104 | myb domain protein 93 |
Link Out ? help Back to Top | |
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Phytozome | mrna16287.1-v1.0-hybrid |
Publications ? help Back to Top | |||
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