PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna16216.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | NF-YB | ||||||||
Protein Properties | Length: 354aa MW: 40486.1 Da PI: 6.9798 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 177.3 | 1.5e-55 | 58 | 153 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvyl 87 +eqdrflPianv+rimkkv+P+n+kiskdaketvqecvsefisfvt+easdkcqrekrkting+d++wa++tlGfe+yv+plk+yl mrna16216.1-v1.0-hybrid 58 KEQDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGEDIIWAITTLGFEEYVHPLKLYL 143 89************************************************************************************ PP NF-YB 88 kkyrelegek 97 +kyrelegek mrna16216.1-v1.0-hybrid 144 QKYRELEGEK 153 *******996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 3.0E-54 | 53 | 182 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.23E-39 | 60 | 163 | IPR009072 | Histone-fold |
Pfam | PF00808 | 4.9E-28 | 63 | 127 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 4.2E-20 | 91 | 109 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 94 | 110 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 4.2E-20 | 110 | 128 | No hit | No description |
PRINTS | PR00615 | 4.2E-20 | 129 | 147 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence Send to blast |
MEDDNHGNNR LNGPNGGSPE NPCLNNSTPA SSCNSNINIH HNHNHNNNHN HHHHSSNKEQ 60 DRFLPIANVG RIMKKVIPGN GKISKDAKET VQECVSEFIS FVTGEASDKC QREKRKTING 120 EDIIWAITTL GFEEYVHPLK LYLQKYRELE GEKLNVPKQQ RLEQRLQQQQ QQQQVVQQEQ 180 EQQSIPNSYT VYSSTSLMSQ PTSFITHHHH HDPAFSLPFS PTSIQKQLQP QDQIDSVGHW 240 TELSSLNLWC LIFMVNVIKE FQLQRYKVEN NTTGDHVHER GNDDVGANLR WAYRAIGFPP 300 CMPLPLWLNQ WLNLDGFLLP DHGNTSSFGE KEVCVGKLYY NNMGQRPHKV CGF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_B | 3e-44 | 56 | 148 | 2 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
4csr_A | 3e-44 | 56 | 148 | 2 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna16216.1-v1.0-hybrid |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004288122.1 | 1e-176 | PREDICTED: nuclear transcription factor Y subunit B-7 | ||||
Swissprot | Q9SIT9 | 9e-66 | NFYB7_ARATH; Nuclear transcription factor Y subunit B-7 | ||||
TrEMBL | A0A2P6RSN2 | 1e-129 | A0A2P6RSN2_ROSCH; Putative transcription factor Hap3/NF-YB family | ||||
STRING | XP_004288122.1 | 1e-176 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13249 | 24 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G13570.1 | 3e-65 | nuclear factor Y, subunit B7 |
Link Out ? help Back to Top | |
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Phytozome | mrna16216.1-v1.0-hybrid |
Publications ? help Back to Top | |||
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