PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna16194.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

Nin-like

Protein Properties

Length: 993aa MW: 109178 Da PI: 5.2808

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna16194.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.7	2.7e-29	593	644	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ mrna16194.1-v1.0-hybrid 593 AEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 644 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.302	578	664	IPR003035	RWP-RK domain
Pfam	PF02042	2.6E-26	596	644	IPR003035	RWP-RK domain
SuperFamily	SSF54277	3.92E-21	886	974	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.7E-22	891	971	No hit	No description
PROSITE profile	PS51745	21.345	892	974	IPR000270	PB1 domain
SMART	SM00666	1.4E-21	892	974	IPR000270	PB1 domain
CDD	cd06407	6.80E-33	893	973	No hit	No description
Pfam	PF00564	4.6E-17	895	973	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 993 aa Download sequence Send to blast
MEYQFSTRQG KDQGCSSSGG AAVEGLVGLD GEARNVISED IFNNIAELMN FDTYAGWCSS 60 PGTMEQIGVS YPSVSYAPLD ALSFAQQNGG ALAVAEDGGS SFDCCDKIGF QQMDTTQFGA 120 STDFNHAHDA AAKLKNGFVQ QNNIMDTADY VISRPHGWSL NEKMLKALSL FKESSGGGIL 180 AQVWVPMKHG DHSFLSTCEQ PYLLDHVLAG YREVSRMFTF SAEEKQGSVL GLPGRVFVSK 240 VPEWTSNVSY YNKAEYLRVE HAADHQVRGS IALPVFDMNS EMSCCAVLEL VSTKDKLNFD 300 AEMEIVCNAL QAVKLRTTTP PRILPHCLSR NQRAALTEIT DVLRAVCHAH TLPLALTWIP 360 CCYSDGDGEG IRRVRVREGI TNSNEKCILC VEETACYVND RTMQGFVHAC AEHHLEEGNG 420 IAGKALQSNH PFFIHDVKVY DIYDYPLVHH ARRYGLNAAV AIRLRSTYTG DDDYILEFFL 480 PVNMKGSSEQ QLLLNNLSGT MQRICKSLRT VSDAELTGVE GSDNGFQREA IPNTPSIPRR 540 NSQSPSSDSE MKSAENIPSN VFNRKDGGVE VDFPPEHAPN GSRRQAEKKR STAEKNVSLS 600 VLQQYFSGSL KDAAKSIGVC PTTLKRICRQ HGISRWPSRK INKVNRSLKK IQTVLDSVQG 660 VEGGLKYDPT TGGFVATGSI IQEFDAQQNL FFPEKNLPAQ NIVPVPQYPV SVPSMSCKDG 720 ERFEIKLEED GCCMNGGTPI PTAHQEKEEV KKQNISVVDC SMNSKPIAID FGSCQPTDHD 780 TMPHNCPETD FGVSYLVKEV NRWGQSNDSL TLESSGCHFV PQSSSSFVVA DEMDIGVDRD 840 GGNVNYNQPT SSSMTDSSNS SGSMMHGCSS SSQSFEERKY QVKETNVEIG SKIIVKATYK 900 EDTIRFKFEP SGGCLKLYEE VAKRLKLQDG TFQLKYLDDE QEWVMLVSDA DLRECLEILD 960 DIGTHSVKFM VRDIPFGVSS SGSSNCFLAG GS*

Sequence ? help Back to Top

Protein Sequence Length: 993 aa Download sequence Send to blast

MEYQFSTRQG KDQGCSSSGG AAVEGLVGLD GEARNVISED IFNNIAELMN FDTYAGWCSS  60
PGTMEQIGVS YPSVSYAPLD ALSFAQQNGG ALAVAEDGGS SFDCCDKIGF QQMDTTQFGA  120
STDFNHAHDA AAKLKNGFVQ QNNIMDTADY VISRPHGWSL NEKMLKALSL FKESSGGGIL  180
AQVWVPMKHG DHSFLSTCEQ PYLLDHVLAG YREVSRMFTF SAEEKQGSVL GLPGRVFVSK  240
VPEWTSNVSY YNKAEYLRVE HAADHQVRGS IALPVFDMNS EMSCCAVLEL VSTKDKLNFD  300
AEMEIVCNAL QAVKLRTTTP PRILPHCLSR NQRAALTEIT DVLRAVCHAH TLPLALTWIP  360
CCYSDGDGEG IRRVRVREGI TNSNEKCILC VEETACYVND RTMQGFVHAC AEHHLEEGNG  420
IAGKALQSNH PFFIHDVKVY DIYDYPLVHH ARRYGLNAAV AIRLRSTYTG DDDYILEFFL  480
PVNMKGSSEQ QLLLNNLSGT MQRICKSLRT VSDAELTGVE GSDNGFQREA IPNTPSIPRR  540
NSQSPSSDSE MKSAENIPSN VFNRKDGGVE VDFPPEHAPN GSRRQAEKKR STAEKNVSLS  600
VLQQYFSGSL KDAAKSIGVC PTTLKRICRQ HGISRWPSRK INKVNRSLKK IQTVLDSVQG  660
VEGGLKYDPT TGGFVATGSI IQEFDAQQNL FFPEKNLPAQ NIVPVPQYPV SVPSMSCKDG  720
ERFEIKLEED GCCMNGGTPI PTAHQEKEEV KKQNISVVDC SMNSKPIAID FGSCQPTDHD  780
TMPHNCPETD FGVSYLVKEV NRWGQSNDSL TLESSGCHFV PQSSSSFVVA DEMDIGVDRD  840
GGNVNYNQPT SSSMTDSSNS SGSMMHGCSS SSQSFEERKY QVKETNVEIG SKIIVKATYK  900
EDTIRFKFEP SGGCLKLYEE VAKRLKLQDG TFQLKYLDDE QEWVMLVSDA DLRECLEILD  960
DIGTHSVKFM VRDIPFGVSS SGSSNCFLAG GS*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna16194.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011464935.1	0.0	PREDICTED: protein NLP9-like
Refseq	XP_011464936.1	0.0	PREDICTED: protein NLP9-like
Swissprot	Q9M1B0	0.0	NLP9_ARATH; Protein NLP9
TrEMBL	A0A2P6RSH2	0.0	A0A2P6RSH2_ROSCH; Putative transcription factor Nin-like family
STRING	XP_004289276.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3464	34	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	mrna16194.1-v1.0-hybrid