PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna16188.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | FAR1 | ||||||||
Protein Properties | Length: 633aa MW: 72648.1 Da PI: 6.3635 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 34.6 | 6.1e-11 | 99 | 144 | 2 | 48 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkkt 48 fYn+YA++ GF +r sk ++s +g ++r fvCs egkr+++k++ mrna16188.1-v1.0-hybrid 99 FYNRYAYRFGFGTRLSKAHTS-SSGLLKDRLFVCSAEGKRRKDKRSV 144 9***************99998.8888****************99983 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.1E-7 | 99 | 143 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 8.5E-14 | 254 | 310 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.78 | 486 | 524 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 2.7E-6 | 494 | 522 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 6.7E-6 | 499 | 526 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 633 aa Download sequence Send to blast |
MEREFHTPSN SNNVAISTQD AEATNTSDYE ISSKMDFGSG IDLNGFVDVE NNEVGGSEEE 60 SEVVRRPSEN AELIHSRMRQ ELIPVVGIEF ETEKDALAFY NRYAYRFGFG TRLSKAHTSS 120 SGLLKDRLFV CSAEGKRRKD KRSVNISLAQ NVQADMAEDA GLDPKETLEL LSQQAGGREN 180 LGFIPEDYKN YLRSNRTREM KSGDTGGVLE YLQRMQSENP SFSYAIQVDV DDLITNIFWA 240 DAKMKVDYDY FGDVVCFDTT YRKNKEGRPF AMFVGVNNHK QTLIFGAALL YDETAETFMW 300 LFDTFANTIV FEKFKDFAED FSSIIYDYED VEDFLIAWNK MLEKYNLQEN TWLSRLFDVK 360 EKWALVHGRE TFCVDITTTQ RSENMNSSIK RYVSYKYDLL RFFRHFHILV DDRRYNELVA 420 DFKAIHTTLA LPFPVKILRN AAKVYIPAVF KWFQVELCKA HDCILKLFSD IGTMRTYEVT 480 AHRKRFHHII TYDSVDNTIT CSCKKLEFAG ILCSHALKVL SANNVKTIPS QYVSKRWRKD 540 IRDQMPKVSC PNPNDDDPKA KIARRYRDLA RLHTELATIA AESNEAYEIA SMALHKTLAD 600 VKASLKKKTN QEVPQVTSPI NNNAPKVVSD VF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna16188.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024164275.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A2P6PSC3 | 0.0 | A0A2P6PSC3_ROSCH; Putative transcription factor FAR family | ||||
STRING | XP_004292935.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF40 | 30 | 530 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 2e-82 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | mrna16188.1-v1.0-hybrid |