PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna16188.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family FAR1
Protein Properties Length: 633aa    MW: 72648.1 Da    PI: 6.3635
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna16188.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR134.66.1e-1199144248
                     FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkkt 48 
                              fYn+YA++ GF +r sk ++s  +g  ++r fvCs egkr+++k++ 
  mrna16188.1-v1.0-hybrid  99 FYNRYAYRFGFGTRLSKAHTS-SSGLLKDRLFVCSAEGKRRKDKRSV 144
                              9***************99998.8888****************99983 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.1E-799143IPR004330FAR1 DNA binding domain
PfamPF105518.5E-14254310IPR018289MULE transposase domain
PROSITE profilePS509669.78486524IPR007527Zinc finger, SWIM-type
PfamPF044342.7E-6494522IPR007527Zinc finger, SWIM-type
SMARTSM005756.7E-6499526IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 633 aa     Download sequence    Send to blast
MEREFHTPSN SNNVAISTQD AEATNTSDYE ISSKMDFGSG IDLNGFVDVE NNEVGGSEEE  60
SEVVRRPSEN AELIHSRMRQ ELIPVVGIEF ETEKDALAFY NRYAYRFGFG TRLSKAHTSS  120
SGLLKDRLFV CSAEGKRRKD KRSVNISLAQ NVQADMAEDA GLDPKETLEL LSQQAGGREN  180
LGFIPEDYKN YLRSNRTREM KSGDTGGVLE YLQRMQSENP SFSYAIQVDV DDLITNIFWA  240
DAKMKVDYDY FGDVVCFDTT YRKNKEGRPF AMFVGVNNHK QTLIFGAALL YDETAETFMW  300
LFDTFANTIV FEKFKDFAED FSSIIYDYED VEDFLIAWNK MLEKYNLQEN TWLSRLFDVK  360
EKWALVHGRE TFCVDITTTQ RSENMNSSIK RYVSYKYDLL RFFRHFHILV DDRRYNELVA  420
DFKAIHTTLA LPFPVKILRN AAKVYIPAVF KWFQVELCKA HDCILKLFSD IGTMRTYEVT  480
AHRKRFHHII TYDSVDNTIT CSCKKLEFAG ILCSHALKVL SANNVKTIPS QYVSKRWRKD  540
IRDQMPKVSC PNPNDDDPKA KIARRYRDLA RLHTELATIA AESNEAYEIA SMALHKTLAD  600
VKASLKKKTN QEVPQVTSPI NNNAPKVVSD VF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna16188.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024164275.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2P6PSC30.0A0A2P6PSC3_ROSCH; Putative transcription factor FAR family
STRINGXP_004292935.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-82FAR1-related sequence 5