PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna15958.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ARR-B
Protein Properties Length: 611aa    MW: 68757.6 Da    PI: 4.6687
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna15958.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like635.9e-20211264155
                  G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                              k r++Wt+ + ++F ++ + L G+ekA+P +i +lm+v+gLt++hv+SHLQkYR 
  mrna15958.1-v1.0-hybrid 211 KRRIVWTEAMKKQFDDVYKYL-GPEKAVPMNIQKLMNVEGLTRSHVASHLQKYRE 264
                              689******************.********************************6 PP
2Response_reg776.9e-26271321106
                              EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHH CS
             Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeee 84 
                              vl vdD+ + +++l+  l+k +y ev+++ ++++ale+l+e++  +Dl++ D+ mp+m+G++ll++++ e  +lp+++v+++g++e
  mrna15958.1-v1.0-hybrid  27 VLAVDDDVTYLKILEASLRKCNY-EVTTVNQAKQALEILRENKnkFDLVISDVWMPEMNGFQLLQQLAHEM-DLPVVMVSSSGDNE 110
                              799********************.***************888888**********************7654.8************* PP

                              HHHHHHHTTESEEEESS--HHH CS
             Response_reg  85 dalealkaGakdflsKpfdpee 106
                              ++++ +  Ga  +l+Kp+++e 
  mrna15958.1-v1.0-hybrid 111 LVKKGILNGACCYLVKPVNIEV 132
                              ******************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521724.7E-3523149IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23009.1E-3924148No hitNo description
SMARTSM004481.3E-3125136IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011039.33226141IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.4E-2227134IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.26E-2828141No hitNo description
Gene3DG3DSA:3.40.50.23009.1E-39192211No hitNo description
SuperFamilySSF466895.2E-15208268IPR009057Homeodomain-like
TIGRFAMsTIGR015577.5E-18211264IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.603.2E-20212268IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 611 aa     Download sequence    Send to blast
MDARDQLGGS VGDQNGEMDR FPDGMRVLAV DDDVTYLKIL EASLRKCNYE VTTVNQAKQA  60
LEILRENKNK FDLVISDVWM PEMNGFQLLQ QLAHEMDLPV VMVSSSGDNE LVKKGILNGA  120
CCYLVKPVNI EVFKTIWQHV FRRKNLNSKD RCKSFDQDKL CNGAGECEEG TSASSSSENI  180
GEHRIKRKYQ NEDDEGGEDE DENEERSTPK KRRIVWTEAM KKQFDDVYKY LGPEKAVPMN  240
IQKLMNVEGL TRSHVASHLQ KYREQLRKGS SNQVKQRARM VVDLGRKDSS SYMPHMSPVD  300
ESGVRQLSNA VPLSSYIPPR MLSRSNFPTG IIVNPSSHLL RPGQSQNLCS SLNTSTLQGN  360
PQQKLGPLVT DFYSSHGMNS LHPKLLDNAL CRSSNFVDNN GCCESWQGGM QGCEQLYQTA  420
LLRSEDSNFG TLPVNNFGVS SSTPLIENTP NDFYSVGVRE NVHIENQGPV APTTYCTSDI  480
WWEDHTQDYN HDRNIPYLVS NDVVDPLCLT LDQNDAVCHR SMESSSFDQF NGDNATIVQC  540
AEVENSTMQT KIEPNEQEKS NDGLVQNSLE LLDNQVEFGF LDGEFVFDAI QKQKENEDYN  600
FLDGGLEFRP *
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna15958.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011467043.10.0PREDICTED: two-component response regulator ARR1-like
TrEMBLA0A2P6RVP71e-165A0A2P6RVP7_ROSCH; Putative response regulator and transcription factor RR-A-type family
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3439722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.14e-73response regulator 12