PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna15953.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 336aa    MW: 36401.8 Da    PI: 10.2254
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna15953.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.1e-18153203256
                      AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                               y+GVr ++ +gr+ AeIrd       r r++lg+f+taeeAa+a++ a+++l+g+
  mrna15953.1-v1.0-hybrid 153 NYRGVRKRP-WGRFSAEIRDrI----GRCRHWLGTFDTAEEAARAYDSAARRLRGA 203
                              59*******.**********32....25**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.42E-31152211No hitNo description
Gene3DG3DSA:3.30.730.101.7E-28153210IPR001471AP2/ERF domain
PfamPF008471.1E-12153202IPR001471AP2/ERF domain
SuperFamilySSF541713.92E-20153211IPR016177DNA-binding domain
PROSITE profilePS5103221.759153210IPR001471AP2/ERF domain
SMARTSM003804.5E-31153216IPR001471AP2/ERF domain
PRINTSPR003677.6E-10154165IPR001471AP2/ERF domain
PRINTSPR003677.6E-10176192IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MSFKATETVP LFRKPVSFRS PSTFRLLTEA ASFYESYLNS QLSVPPISVP NQLKLYNQPG  60
HSHVSSHTSP FPVLNANVSD SKTEPPPVLD GIAAVVGEHV LFGGKNAASN NVANSENTQV  120
ADFVNFSVRF GSSGTSKEAA DKKGTGNVSV QKNYRGVRKR PWGRFSAEIR DRIGRCRHWL  180
GTFDTAEEAA RAYDSAARRL RGAKAQTNFQ IPSVIPLSYG SASSSACVNI NAAEKKSRSR  240
GAKSKSTRET SSVVVTSVAQ LFSQTPVPRT TVIGNGNQNL ELDLKLGMNF ESTDTVVEFD  300
LSGSSLIRTS YSRTLFFSAL EYFVAEALRS QDPVI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-18152211161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A8e-18141209271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna15953.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004305488.10.0PREDICTED: ethylene-responsive transcription factor ERF084
TrEMBLA0A3S8T9900.0A0A3S8T990_FRAAN; Transcription factor ERF63
STRINGXP_004305488.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130232631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.11e-26ERF family protein