PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna15913.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family AP2
Protein Properties Length: 362aa    MW: 40169.3 Da    PI: 7.8819
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna15913.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.18.8e-1354110155
                      AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                              s y+GV++++++gr++A+++d  ++n  ++k+ + g ++ +e Aa+a++ a++k++g
  mrna15913.1-v1.0-hybrid  54 SIYRGVTRHRWTGRYEAHLWDkNCWNEsQNKKGRQGAYDDEEAAARAYDLAALKYWG 110
                              57*******************99998898888888********************98 PP
2AP251.42.7e-16153204155
                      AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              s+y+GV +++ +grW+A+I   +   g +k+ +lg+f t eeAa a++ a+ +++g
  mrna15913.1-v1.0-hybrid 153 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTFATQEEAATAYDMAAIEYRG 204
                              89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.2E-854110IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-1554120IPR016177DNA-binding domain
PROSITE profilePS5103218.50555118IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.1E-1255119IPR001471AP2/ERF domain
SMARTSM003803.6E-2155124IPR001471AP2/ERF domain
PRINTSPR003674.1E-65667IPR001471AP2/ERF domain
PfamPF008478.7E-12153204IPR001471AP2/ERF domain
CDDcd000183.10E-24153214No hitNo description
SuperFamilySSF541717.85E-18153214IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.2E-18154213IPR001471AP2/ERF domain
PROSITE profilePS5103218.36154212IPR001471AP2/ERF domain
SMARTSM003803.3E-25154218IPR001471AP2/ERF domain
PRINTSPR003674.1E-6194214IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MAKTSQKIQK NTTPSSSNNS NTTTSTTTTT SPPATKVKRT RKSVRRDSPP QRSSIYRGVT  60
RHRWTGRYEA HLWDKNCWNE SQNKKGRQGA YDDEEAAARA YDLAALKYWG QDTILNLPVS  120
TYEEELKEME GQSKEEYIGS LRRKSSGFSR GVSKYRGVAR HHHNGRWEAR IGRVFGNKYL  180
YLGTFATQEE AATAYDMAAI EYRGLNAVTN FDLSRYIKSL CPNNEEIVPN NTQQNPNADL  240
SSIENPDSKV GLGLMPNNPS PSTSESMVAL PRPGSGSSAS SALGLLLQSP KFKEMLERTS  300
VAADCSSSTT SEPNMPRRSF PDDIQTYFDC QDLNSYAEGD DVIFGELNSF ASSVFHCELD  360
A*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna15913.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004305469.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-117AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A2P6RV940.0A0A2P6RV94_ROSCH; Putative transcription factor AP2-EREBP family
STRINGXP_004305469.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.11e-109ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]