PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna15899.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family M-type_MADS
Protein Properties Length: 297aa    MW: 33382.5 Da    PI: 9.4016
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna15899.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.59.7e-151150342
                             --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                   SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                             i n+s r+ tf kR++ ++KK  ELS+LC+++++ i++s+
  mrna15899.1-v1.0-hybrid 11 IINNSARKATFNKRKKSMMKKLGELSILCGVDACAIVYSP 50
                             679999*********************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-21160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.582161IPR002100Transcription factor, MADS-box
CDDcd002665.44E-28283No hitNo description
SuperFamilySSF554551.44E-22394IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-9323IPR002100Transcription factor, MADS-box
PfamPF003192.1E-151150IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-93859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MARKKVKIAY IINNSARKAT FNKRKKSMMK KLGELSILCG VDACAIVYSP FDSQVEVWSS  60
QSMVENVLEK FKNLPVIEKS RKMLSQETYL IRMIFKENEQ LKKVRRKNRE NEMKAVLFQS  120
LTTGLPQFQN LKLMDMDVLG RLINNKLNDV DNKGKTLGEK LVVSGWDHDL VEWASFQAVL  180
VAWSPRRSTE FDREISIGFI SDEIGSVRWR RLATGPTGCE EVVTDGSGLV GARPPAESRG  240
SGRRHLSLGA HSGYPEKIAA GLAWVHSEQE LCNEGVTLCE SNDLICPLYA KQWIDS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11631RKATFNKRKKSMMKKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna15899.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004305465.11e-111PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLA0A2P6SCL52e-60A0A2P6SCL5_ROSCH; Putative transcription factor MADS-type1 family
STRINGXP_004305465.11e-111(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.18e-40AGAMOUS-like 80