PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna15899.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 297aa MW: 33382.5 Da PI: 9.4016 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 45.5 | 9.7e-15 | 11 | 50 | 3 | 42 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i n+s r+ tf kR++ ++KK ELS+LC+++++ i++s+ mrna15899.1-v1.0-hybrid 11 IINNSARKATFNKRKKSMMKKLGELSILCGVDACAIVYSP 50 679999*********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.2E-21 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 16.582 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 5.44E-28 | 2 | 83 | No hit | No description |
SuperFamily | SSF55455 | 1.44E-22 | 3 | 94 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.2E-9 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.1E-15 | 11 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.2E-9 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.2E-9 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MARKKVKIAY IINNSARKAT FNKRKKSMMK KLGELSILCG VDACAIVYSP FDSQVEVWSS 60 QSMVENVLEK FKNLPVIEKS RKMLSQETYL IRMIFKENEQ LKKVRRKNRE NEMKAVLFQS 120 LTTGLPQFQN LKLMDMDVLG RLINNKLNDV DNKGKTLGEK LVVSGWDHDL VEWASFQAVL 180 VAWSPRRSTE FDREISIGFI SDEIGSVRWR RLATGPTGCE EVVTDGSGLV GARPPAESRG 240 SGRRHLSLGA HSGYPEKIAA GLAWVHSEQE LCNEGVTLCE SNDLICPLYA KQWIDS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 16 | 31 | RKATFNKRKKSMMKKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna15899.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004305465.1 | 1e-111 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A2P6SCL5 | 2e-60 | A0A2P6SCL5_ROSCH; Putative transcription factor MADS-type1 family | ||||
STRING | XP_004305465.1 | 1e-111 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF452 | 33 | 154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 8e-40 | AGAMOUS-like 80 |
Link Out ? help Back to Top | |
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Phytozome | mrna15899.1-v1.0-hybrid |