PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna15841.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | WRKY | ||||||||
Protein Properties | Length: 503aa MW: 54971.1 Da PI: 8.3315 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 92.5 | 3.2e-29 | 348 | 407 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK+ +++++pr+Y++C++a +Cpvkkkv+rs ed+++++ tYegeHnh+ mrna15841.1-v1.0-hybrid 348 VKDGFQWRKYGQKVTRDNPCPRAYFKCSFApTCPVKKKVQRSVEDQSILVATYEGEHNHP 407 58***************************99****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 25.649 | 343 | 409 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.9E-28 | 344 | 409 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.62E-25 | 345 | 409 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.5E-34 | 348 | 408 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.6E-24 | 349 | 407 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0002237 | Biological Process | response to molecule of bacterial origin | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0050691 | Biological Process | regulation of defense response to virus by host | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root | ||||
PO:0007134 | developmental stage | sporophyte vegetative stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 503 aa Download sequence Send to blast |
MSTLNPRVQT WRRRPLEGGD CVVRLVAVFG KLGCDYVVAT RGDSISLIMF GFRRGGATRL 60 GLTATADRSN GGAPCLASAT EVGIGVGWFR DWLLSASGLD CGGSLDGLKE QRGLADQWLT 120 LMMEMQAWWL SGLDGRIFAG LTAWRLAGME EDPGDEGVVG ALGRLRDIFA SRALIDMDYS 180 SAAASACDID TSLDLNTRPL RLFDDSPPIK KEVHSKILID FGRELSAKEE SGALVEELHR 240 VSSENKKLTE MLTMMGESYN ALRSQLLEYM NKNPEKELSP VSKKRKSESS NNNNNSGNNI 300 LNGINNGNSE SSSSDGESCK KPREETIKAK IYRSYVRTEP SDMTSLVVKD GFQWRKYGQK 360 VTRDNPCPRA YFKCSFAPTC PVKKKVQRSV EDQSILVATY EGEHNHPHPS QIEASSGSNR 420 CMTLGSVPCS TSLGSSGPTI TLDLTKSKSN TTDTKSPKQK TETPEVRKFL VEQMASSLTK 480 DPNFTKALAA AISGRILQQN SY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-19 | 347 | 409 | 13 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250|UniProtKB:Q9SUP6}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00251 | DAP | Transfer from AT1G80840 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna15841.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ377425 | 5e-55 | GQ377425.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 5 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004303242.1 | 0.0 | PREDICTED: probable WRKY transcription factor 40 | ||||
Swissprot | Q9SAH7 | 7e-97 | WRK40_ARATH; Probable WRKY transcription factor 40 | ||||
TrEMBL | A0A2P6RVG6 | 0.0 | A0A2P6RVG6_ROSCH; Putative transcription factor WRKY family | ||||
STRING | XP_004303242.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF973 | 34 | 115 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80840.1 | 1e-88 | WRKY DNA-binding protein 40 |
Link Out ? help Back to Top | |
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Phytozome | mrna15841.1-v1.0-hybrid |