PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna15716.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family FAR1
Protein Properties Length: 535aa    MW: 61037.6 Da    PI: 5.7213
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna15716.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR171.42.1e-22175257290
                     FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 
                              fYn YAk+ GF vr+s++ ++ +++e ++ ++ Cs  g++++++ +     r+r+etrtgC a++k +++++++w+++++eleHnH
  mrna15716.1-v1.0-hybrid 175 FYNCYAKQHGFGVRVSNTWYR-KSKERYRGKLSCSSAGFKKKSDAN-----RPRPETRTGCPAMVKFRLMESNRWRIIEVELEHNH 254
                              9***************99997.66779***************9988.....*********************************** PP

                     FAR1  88 ela 90 
                               ++
  mrna15716.1-v1.0-hybrid 255 LIS 257
                              876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.9E-19175257IPR004330FAR1 DNA binding domain
PfamPF044342.8E-4416449IPR007527Zinc finger, SWIM-type
PROSITE profilePS509669.112416452IPR007527Zinc finger, SWIM-type
SMARTSM005753.9E-6427454IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MVEEDEDVID EGEQCGCRRG RRGSGDRRGS GGPRLEIRGQ RSEIGVEVEV RDWRLEVRDR  60
IFASWLAADD DSLPRAMVER ERSTIDDGRP SPCFFRSGSL EKEVLLTKMA MSRGLMDEVS  120
LNTEPAGDDD ADGYEIEGDC AMTEFVSQTG IMQGENPLPP AAGMEFDTYE DVYYFYNCYA  180
KQHGFGVRVS NTWYRKSKER YRGKLSCSSA GFKKKSDANR PRPETRTGCP AMVKFRLMES  240
NRWRIIEVEL EHNHLISPAS GKFYKSHKSI GGGTKRSLQL DSAEEVQKIR LFRTVIVDSE  300
GHRSIDVDEG ESGSKVDYSN QLRLKEGDAQ ATHHQLEVLA DLDSRNSSYM FKSGSHFELQ  360
LSELYTNDIL RKFGKEVEGM YSCFSTRQLN VDGPLIKYTV KEQTEVDGNR REMRDYEVLY  420
NPSEMEVLCI CGMFNLKGYL CRHALSILNQ NGVQEIPALY ILSRWRKDIK RSYVYDHSCS  480
GIDINNPVHR YDHLYKCIVQ VVEEGRKSQD RYKVALQELN GILNKLCITE DCAL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna15716.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011467070.11e-151PREDICTED: protein FAR1-RELATED SEQUENCE 6-like
TrEMBLA0A2H5QM010.0A0A2H5QM01_CITUN; Uncharacterized protein
STRINGXP_004305499.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-56FAR1-related sequence 6