PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna15714.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

FAR1

Protein Properties

Length: 427aa MW: 49398.2 Da PI: 8.2727

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna15714.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.1	5.2e-22	60	143	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 ++Yn YAke+GF+vr+++s +++++e + + ++Cs +g+++ ++ + r r+etrtgC a+l++++ ++++w++ ++ leHn mrna15714.1-v1.0-hybrid 60 NYYNCYAKELGFRVRVKNSWFKRNSKEKYGAVLCCSSQGFKRIKDVN-----RLRKETRTGCPAMLRMRLVDSKRWRILEVALEHN 140 69***************************************9988.....99****************************** PP FAR1 87 Hel 89 H l mrna15714.1-v1.0-hybrid 141 HLL 143 *87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.9E-19	60	143	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.916	304	340	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	7.2E-4	314	336	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.4E-6	315	342	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence Send to blast
MEIGSLNSEQ VQDPDSNVIA TARDGVLMEL DAENCVREGK KEFVAPAIGM EFESYEDAYN 60 YYNCYAKELG FRVRVKNSWF KRNSKEKYGA VLCCSSQGFK RIKDVNRLRK ETRTGCPAML 120 RMRLVDSKRW RILEVALEHN HLLGTKMYKS MKKMTSGTKR KSQSSSDAEN QTIKLYRALV 180 IDSGGNGPSN FNATEARNDS PNQLNLKKEF LDKYELALQK KHKEEALADI DSRSSSPMLK 240 TRCSFELQLS KIYTRDIFKK FQFEVEEMYS CFSTTQLHID GPIIIFLVKE RVVADGNQRE 300 IRDYEVLYNR TAGEVRCICS CFNFHGYLCR HALCVLNFNG VEEIPSKYIL ARWKKDYKRL 360 YIPDHGSNNV DGTDRMQWFS QLYRSALQIV EEGVISLDHY NVAVQTFEES LKRVHEIEEK 420 HNPENL*

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence Send to blast

MEIGSLNSEQ VQDPDSNVIA TARDGVLMEL DAENCVREGK KEFVAPAIGM EFESYEDAYN  60
YYNCYAKELG FRVRVKNSWF KRNSKEKYGA VLCCSSQGFK RIKDVNRLRK ETRTGCPAML  120
RMRLVDSKRW RILEVALEHN HLLGTKMYKS MKKMTSGTKR KSQSSSDAEN QTIKLYRALV  180
IDSGGNGPSN FNATEARNDS PNQLNLKKEF LDKYELALQK KHKEEALADI DSRSSSPMLK  240
TRCSFELQLS KIYTRDIFKK FQFEVEEMYS CFSTTQLHID GPIIIFLVKE RVVADGNQRE  300
IRDYEVLYNR TAGEVRCICS CFNFHGYLCR HALCVLNFNG VEEIPSKYIL ARWKKDYKRL  360
YIPDHGSNNV DGTDRMQWFS QLYRSALQIV EEGVISLDHY NVAVQTFEES LKRVHEIEEK  420
HNPENL*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna15714.1-v1.0-hybrid

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011467068.1	1e-156	PREDICTED: protein FAR1-RELATED SEQUENCE 6
Refseq	XP_011467069.1	1e-156	PREDICTED: protein FAR1-RELATED SEQUENCE 6
Swissprot	Q9SSQ4	1e-110	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A0A0K8R3	0.0	A0A0A0K8R3_CUCSA; Uncharacterized protein
TrEMBL	A0A2P5YJ11	0.0	A0A2P5YJ11_GOSBA; Uncharacterized protein
STRING	XP_004305499.1	1e-147	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	1e-112	FAR1-related sequence 6

Link Out ? help Back to Top
Phytozome	mrna15714.1-v1.0-hybrid

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]