PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna15644.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

NAC

Protein Properties

Length: 295aa MW: 32899.5 Da PI: 6.5152

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna15644.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	137.6	7.9e-43	5	143	2	127
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratk 79 ppGfrF Pt+eelv++yL +k++g++ ++++i+ +diy+++PwdLp+ +++++++w+fF++r++++a+g r++r t+ mrna15644.1-v1.0-hybrid 5 PPGFRFYPTEEELVSFYLPHKLDGTRkdvnRVMDRIIPVLDIYEFNPWDLPRnsgeICHGDQEQWFFFIPRQESEARGGRPKRLTT 90 9*********************9955532333479999******9546654445778******************* PP NAM 80 sgyWkatgkdkevlsk.....kgelvglkktLvfykgrapkgektdWvmheyr 127 +gyWkatg+ v+s+ ++ ++glk+t+vfy+grapkg+kt+W m+ey+ mrna15644.1-v1.0-hybrid 91 TGYWKATGSPSYVYSSsssstNHGAIGLKRTMVFYTGRAPKGSKTEWKMNEYK 143 ***********9766665566*************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.84E-46	3	178	IPR003441	NAC domain
PROSITE profile	PS51005	48.206	4	178	IPR003441	NAC domain
Pfam	PF02365	6.7E-22	5	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MEDFPPGFRF YPTEEELVSF YLPHKLDGTR KDVNRVMDRI IPVLDIYEFN PWDLPRNSGE 60 ICHGDQEQWF FFIPRQESEA RGGRPKRLTT TGYWKATGSP SYVYSSSSSS TNHGAIGLKR 120 TMVFYTGRAP KGSKTEWKMN EYKAIEEDDQ LHAPSSSSNA TPAPALRQEF SLCRVYKKSK 180 CLRAFDRRPS GTGDIMRRPT VTVQLPALPQ LGTDHHNEGS TYPTAISHAQ NIIPAAPNSY 240 NVEMERISTL SSSGSSSSGD HGQPSQSGQS TGSLPVAVDN GEPLWELDQL DWFN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-35	4	178	17	165	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-35	4	178	17	165	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-35	4	178	17	165	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-35	4	178	17	165	NO APICAL MERISTEM PROTEIN
3swm_A	3e-35	4	178	20	168	NAC domain-containing protein 19
3swm_B	3e-35	4	178	20	168	NAC domain-containing protein 19
3swm_C	3e-35	4	178	20	168	NAC domain-containing protein 19
3swm_D	3e-35	4	178	20	168	NAC domain-containing protein 19
3swp_A	3e-35	4	178	20	168	NAC domain-containing protein 19
3swp_B	3e-35	4	178	20	168	NAC domain-containing protein 19
3swp_C	3e-35	4	178	20	168	NAC domain-containing protein 19
3swp_D	3e-35	4	178	20	168	NAC domain-containing protein 19
4dul_A	2e-35	4	178	17	165	NAC domain-containing protein 19
4dul_B	2e-35	4	178	17	165	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna15644.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004303531.1	0.0	PREDICTED: NAC domain-containing protein 90-like
TrEMBL	A0A2P6RC90	1e-175	A0A2P6RC90_ROSCH; Putative transcription factor NAM family
STRING	XP_004303531.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF871	34	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	6e-63	NAC domain containing protein 90

Link Out ? help Back to Top
Phytozome	mrna15644.1-v1.0-hybrid