PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna15609.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family FAR1
Protein Properties Length: 434aa    MW: 50050.9 Da    PI: 6.388
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna15609.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR154.44.2e-17121238190
                     FAR1   1 kfYneYAkevGFsvrkskskks..krngeitkrtfvCskegkreeekkk.........................tekerrtraetr 59 
                              +fY+ Y+  +GFs+rk+k++k   +  + +++r ++Csk+g++++ +++                         ++   r+ + +r
  mrna15609.1-v1.0-hybrid 121 QFYSYYGFIMGFSIRKNKMEKVvvDGVEVVVRRSWTCSKQGYSKQLRNNkqppfeseeggkrkrnafsdkckgkKKGVFREIKYSR 206
                              6********************9555566899***********999888889***************999987654455568899** PP

                     FAR1  60 tgCkaklkvkkek.dgkwevtkleleHnHela 90 
                               gCka l vk++k +g ++v+k++++HnHela
  mrna15609.1-v1.0-hybrid 207 SGCKAVLWVKLNKkSGLYHVSKFVTDHNHELA 238
                              ************99****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.5E-15121238IPR004330FAR1 DNA binding domain
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009001anatomyfruit
PO:0007010developmental stagewhole plant fruit ripening stage
PO:0007027developmental stagewhole plant fruit formation stage 70% to final size
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MNIDPEIDDG GLRFSEKNYY QQTDSDREDS DIVNVAEDCD DYKEEAKSNI EKGDSGKCVE  60
DKIRMDSNKC VDYLEEGVKV AGLRGVFETD WFLHLEGKNM KTLKLEDIED ISFRNLDEAE  120
QFYSYYGFIM GFSIRKNKME KVVVDGVEVV VRRSWTCSKQ GYSKQLRNNK QPPFESEEGG  180
KRKRNAFSDK CKGKKKGVFR EIKYSRSGCK AVLWVKLNKK SGLYHVSKFV TDHNHELAQV  240
SERYLLRSNR HVLIQDIYEV QALREAQVST SAAYDYLLKQ SGGAEFVGFL LKDLYNRLDA  300
DKKINKQHGD AEAALNWMRL KGQEDPLFFA RYTKDAEGRL SSLFWRDQTS LLDYEAYGDV  360
LIVDSRNTNF WAISDIHTTT TPDNFIYEEH GASTSYRPGQ VEDQGFQILN APANCWHFSS  420
QGIHNPRHHR DIR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna15609.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1761223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.16e-20FAR1-related sequence 5