PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna15606.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family FAR1
Protein Properties Length: 691aa    MW: 79473.2 Da    PI: 6.3505
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna15606.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR179.46.6e-2569160190
                     FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtklel 83 
                              ++Y+++A++ GFs+rk++s++s++ g i++r+fvC+++g+++++kk+++++ r+r++ r+gC+akl ++ke    +++w+v+++++
  mrna15606.1-v1.0-hybrid  69 EYYSNFARKNGFSIRKARSTESQNLG-IYRRDFVCYRSGFNQPRKKANVEHPRERKSVRCGCDAKLYLTKEIvdgNSQWYVSQFSN 153
                              69********************8888.******************************************99777899********* PP

                     FAR1  84 eHnHela 90 
                               HnHel 
  mrna15606.1-v1.0-hybrid 154 VHNHELL 160
                              *****96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.0E-2369160IPR004330FAR1 DNA binding domain
PfamPF105514.8E-22292385IPR018289MULE transposase domain
PROSITE profilePS509669.866564599IPR007527Zinc finger, SWIM-type
PfamPF044341.6E-7567597IPR007527Zinc finger, SWIM-type
SMARTSM005755.1E-4574601IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 691 aa     Download sequence    Send to blast
MKPSNNIWIR RQQCPCGDWK CYIKYEGDDP ASVSSLHVKS EITSSSSSSE AVFTPYVGQI  60
FKTDDDAFEY YSNFARKNGF SIRKARSTES QNLGIYRRDF VCYRSGFNQP RKKANVEHPR  120
ERKSVRCGCD AKLYLTKEIV DGNSQWYVSQ FSNVHNHELL EDDQVRLLPA YRKIQEADQE  180
RILLLSKAGF PVNRIVKVLE LEKGVQPGQL PFIEKDIRNF IRTCKKSVQD NDALLNEKRE  240
NDMLELLEAC KSMTERDPGF VYDYTVDENE KVENIAWSYG DSVRAYTVFG DVVAFDTTYR  300
SITYGLLLGV WFGMDNHGKA IFLGCVLLHD ESSHSFAWAL QAFMRFMRGR CPQTILTDID  360
SGLRDAISRE LTSTRHVICI WHILSKISSW FSLPLGPQYE NFKAEFEMLS HLESVEDFEH  420
QWNILVARFG LVPDKHIDLL YSSRESWSLS YIRGYFLART LTAEFSVALE SFLKRILNAQ  480
TCLQVLFEQV SIAANLGSQT REGMQYMNVK TGMPIEEHAR NILTPYAFSV LQHEIVLSVQ  540
YATTEMANGS YLVRHYKKLD GESLVIWIPD DEQIHCSCKE FEHSGILCRH SLRVLMVKNY  600
FQLPEKYYLL RWRLESSLGY LADENAQSSA GDCAQSFNTL TASLLTESLV SKDRFNYVHR  660
ELSSLLEHVR NMPVIDEYAM NMAVNSISDS *
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna15606.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011467299.10.0PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
SwissprotQ9LKR40.0FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBLA0A2P6S1E20.0A0A2P6S1E2_ROSCH; Putative transcription factor FAR family
STRINGXP_004303564.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59430113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.10.0FAR1-related sequence 10
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]