PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna15606.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | FAR1 | ||||||||
Protein Properties | Length: 691aa MW: 79473.2 Da PI: 6.3505 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 79.4 | 6.6e-25 | 69 | 160 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtklel 83 ++Y+++A++ GFs+rk++s++s++ g i++r+fvC+++g+++++kk+++++ r+r++ r+gC+akl ++ke +++w+v+++++ mrna15606.1-v1.0-hybrid 69 EYYSNFARKNGFSIRKARSTESQNLG-IYRRDFVCYRSGFNQPRKKANVEHPRERKSVRCGCDAKLYLTKEIvdgNSQWYVSQFSN 153 69********************8888.******************************************99777899********* PP FAR1 84 eHnHela 90 HnHel mrna15606.1-v1.0-hybrid 154 VHNHELL 160 *****96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 8.0E-23 | 69 | 160 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 4.8E-22 | 292 | 385 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.866 | 564 | 599 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 1.6E-7 | 567 | 597 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 5.1E-4 | 574 | 601 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 691 aa Download sequence Send to blast |
MKPSNNIWIR RQQCPCGDWK CYIKYEGDDP ASVSSLHVKS EITSSSSSSE AVFTPYVGQI 60 FKTDDDAFEY YSNFARKNGF SIRKARSTES QNLGIYRRDF VCYRSGFNQP RKKANVEHPR 120 ERKSVRCGCD AKLYLTKEIV DGNSQWYVSQ FSNVHNHELL EDDQVRLLPA YRKIQEADQE 180 RILLLSKAGF PVNRIVKVLE LEKGVQPGQL PFIEKDIRNF IRTCKKSVQD NDALLNEKRE 240 NDMLELLEAC KSMTERDPGF VYDYTVDENE KVENIAWSYG DSVRAYTVFG DVVAFDTTYR 300 SITYGLLLGV WFGMDNHGKA IFLGCVLLHD ESSHSFAWAL QAFMRFMRGR CPQTILTDID 360 SGLRDAISRE LTSTRHVICI WHILSKISSW FSLPLGPQYE NFKAEFEMLS HLESVEDFEH 420 QWNILVARFG LVPDKHIDLL YSSRESWSLS YIRGYFLART LTAEFSVALE SFLKRILNAQ 480 TCLQVLFEQV SIAANLGSQT REGMQYMNVK TGMPIEEHAR NILTPYAFSV LQHEIVLSVQ 540 YATTEMANGS YLVRHYKKLD GESLVIWIPD DEQIHCSCKE FEHSGILCRH SLRVLMVKNY 600 FQLPEKYYLL RWRLESSLGY LADENAQSSA GDCAQSFNTL TASLLTESLV SKDRFNYVHR 660 ELSSLLEHVR NMPVIDEYAM NMAVNSISDS * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna15606.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011467299.1 | 0.0 | PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 | ||||
Swissprot | Q9LKR4 | 0.0 | FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10 | ||||
TrEMBL | A0A2P6S1E2 | 0.0 | A0A2P6S1E2_ROSCH; Putative transcription factor FAR family | ||||
STRING | XP_004303564.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF594 | 30 | 113 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28530.1 | 0.0 | FAR1-related sequence 10 |
Link Out ? help Back to Top | |
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Phytozome | mrna15606.1-v1.0-hybrid |
Publications ? help Back to Top | |||
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