PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna15603.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family SAP
Protein Properties Length: 488aa    MW: 53637.3 Da    PI: 8.1222
Description SAP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna15603.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SAP781.3e-24193182
                      SAP  1 mssssssssseseegseggeggdass............gesegpsssrqraanevwpePflealatqvaidasrslGrlaaasalanv 76
                             msssssssss s+++  ++++ d+++             ++egpsssr+ra+ evwpePf+eala+q+aidasr++Grla a alan+
  mrna15603.1-v1.0-hybrid  1 MSSSSSSSSSPSSSSP-STSQNDRGNvagtstvrqrrgSDFEGPSSSRRRAVSEVWPEPFIEALAAQIAIDASRNIGRLAVAAALANI 87
                             7777777766555543.3333344444578999***999************************************************* PP

                      SAP 77 fqvcst 82
                             fq  s+
  mrna15603.1-v1.0-hybrid 88 FQAPSS 93
                             **8875 PP
2SAP620.24.2e-18910848374454
                      SAP  74 anvfqvcstwravsrsdllwqrltrriWrrtkllrdtWreeyiyrhrtarnfrtrrysyvtlqfdpadvdedndadalsCrclals 159
                              ++v +vcstwravsrs+llw+rl+rriW rt+l +dtWr+ey+y+hrtarnfr++ry+++ l fdp+dvd+   +d l+Crclals
  mrna15603.1-v1.0-hybrid 108 MTVSRVCSTWRAVSRSELLWRRLSRRIWGRTQLTQDTWRDEYVYWHRTARNFRMGRYTHTRLYFDPSDVDD---PDGLTCRCLALS 190
                              5789***************************************************************9998...689********* PP

                      SAP 160 dkylaaGfadGavrlfdletrlhvstflpqhrdrlGrfsravsGivisdsrlvfatldGdihvavidgagaaaarrallGdvvndG 245
                              d++la+GfadGavrlf+l+trlhvst++p+hrdr+Grfsrav+GivisdsrlvfatldGdihva+++g   a +rra+lGd +ndG
  mrna15603.1-v1.0-hybrid 191 DTHLACGFADGAVRLFNLTTRLHVSTYRPHHRDRMGRFSRAVTGIVISDSRLVFATLDGDIHVAALHG--PAITRRAHLGDWMNDG 274
                              ********************************************************************..679************* PP

                      SAP 246 alvdfaGsgrWwvGlyaGvpGrafhiWdaeteelvfvGGsltdPeavmGWhmlteltelvGrvrvteretavaCtslrlvvfdlrn 331
                              +lvdf+G+grWwvGlyaGvpGra hiWda+teel fv GsltdPeav GWhml elt +vGrvrvt +etavaCts r++vfdlrn
  mrna15603.1-v1.0-hybrid 275 VLVDFTGCGRWWVGLYAGVPGRAIHIWDASTEELLFVDGSLTDPEAVAGWHMLRELTGFVGRVRVTTQETAVACTSARVIVFDLRN 360
                              ************************************************************************************** PP

                      SAP 332 qgvvlreeeerrGlivssldasneayvvvdsrGvatvrrvenleevcrfrvrg.aqrgvlgCvnggyalvyaggvlrvWeiekkeg 416
                              qgvvl+++e rrG++v+s+d+sn  yvvv +rG+a+vrr+++ +e+crf v g  q gv+gC+nggyal+++gg +rvWe+e+ e 
  mrna15603.1-v1.0-hybrid 361 QGVVLADDEYRRGVVVTSVDVSNGRYVVVGNRGMARVRRADTAQEMCRFMVLGaGQMGVMGCMNGGYALMCGGGAVRVWEVERGE- 445
                              ***************************************************9989****************************77. PP

                      SAP 417 ylyslrervgevnalvaddrhvavsssdgtihlldfga 454
                              yly+++e vg v a+v d+rhva+  sd+t+hl+dfga
  mrna15603.1-v1.0-hybrid 446 YLYNFTEPVGAVSAFVCDERHVAAWGSDTTLHLWDFGA 483
                              *************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.1280.507.3E-7109166No hitNo description
SuperFamilySSF813832.62E-7110154IPR001810F-box domain
SuperFamilySSF509782.87E-20184256IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.104.3E-17184253IPR015943WD40/YVTN repeat-like-containing domain
Gene3DG3DSA:2.130.10.104.3E-17301483IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509782.87E-20322480IPR017986WD40-repeat-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009908Biological Processflower development
GO:0030163Biological Processprotein catabolic process
GO:0046622Biological Processpositive regulation of organ growth
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MSSSSSSSSS PSSSSPSTSQ NDRGNVAGTS TVRQRRGSDF EGPSSSRRRA VSEVWPEPFI  60
EALAAQIAID ASRNIGRLAV AAALANIFQA PSSRSSSSSI LSHNYIDMTV SRVCSTWRAV  120
SRSELLWRRL SRRIWGRTQL TQDTWRDEYV YWHRTARNFR MGRYTHTRLY FDPSDVDDPD  180
GLTCRCLALS DTHLACGFAD GAVRLFNLTT RLHVSTYRPH HRDRMGRFSR AVTGIVISDS  240
RLVFATLDGD IHVAALHGPA ITRRAHLGDW MNDGVLVDFT GCGRWWVGLY AGVPGRAIHI  300
WDASTEELLF VDGSLTDPEA VAGWHMLREL TGFVGRVRVT TQETAVACTS ARVIVFDLRN  360
QGVVLADDEY RRGVVVTSVD VSNGRYVVVG NRGMARVRRA DTAQEMCRFM VLGAGQMGVM  420
GCMNGGYALM CGGGAVRVWE VERGEYLYNF TEPVGAVSAF VCDERHVAAW GSDTTLHLWD  480
FGAGAAE*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in the specification of floral identity. Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in the external flower organs in association with APETALA2 and other repressors. Is required to maintain floral meristem identity in concert with AGAMOUS. Interacts also with APETALA2 to ensure the normal development of ovule.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna15603.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004305672.10.0PREDICTED: transcriptional regulator STERILE APETALA
SwissprotQ9FKH11e-180SAP_ARATH; Transcriptional regulator STERILE APETALA
TrEMBLA0A2P6S1F30.0A0A2P6S1F3_ROSCH; Putative transcription factor WD40-like family
STRINGXP_004305672.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76873146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35770.11e-174SAP family protein
Publications ? help Back to Top
  1. Li N, et al.
    STERILE APETALA modulates the stability of a repressor protein complex to control organ size in Arabidopsis thaliana.
    PLoS Genet., 2018. 14(2): p. e1007218
    [PMID:29401459]