PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna15552.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family CO-like
Protein Properties Length: 418aa    MW: 45246.5 Da    PI: 5.3273
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna15552.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.15.6e-06444539
                 zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                             +C+ +++++   +C+++  +lC +C  + H+       H++
  mrna15552.1-v1.0-hybrid  4 ICDFCGDQRSMVYCRSDAACLCLSCDRNVHSAnalsrrHSR 44
                             7*****************************65677777766 PP
2zf-B_box24.55.4e-084689441
                 zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41
                               C++++++++   C++ ++ lC++C   +H g       H++++
  mrna15552.1-v1.0-hybrid 46 LLCERCNSQPALVRCTEERVSLCQNCDWMGH-GastsaasHKRQT 89
                             57*****************************.5588888888765 PP
3CCT58.52.3e-20358401144
                      CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                              R +a++RYkeK+k RkFeK++rY+sRKa+A+ R+RvKGrF k+ 
  mrna15552.1-v1.0-hybrid 358 RSNAVMRYKEKKKARKFEKRVRYASRKARADVRKRVKGRFIKAG 401
                              899*************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.684147IPR000315B-box-type zinc finger
SMARTSM003363.1E-8447IPR000315B-box-type zinc finger
CDDcd000213.57E-7447No hitNo description
PROSITE profilePS501199.24390IPR000315B-box-type zinc finger
CDDcd000216.22E-54790No hitNo description
SMARTSM003360.54890IPR000315B-box-type zinc finger
PfamPF062031.7E-15358400IPR010402CCT domain
PROSITE profilePS5101715.269358400IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MGYICDFCGD QRSMVYCRSD AACLCLSCDR NVHSANALSR RHSRTLLCER CNSQPALVRC  60
TEERVSLCQN CDWMGHGAST SAASHKRQTL NCYSGCPSAS ELSSIWSFVL ELPSASVGES  120
ACEQEMGLMS IAENSTGSAC SPQENNNREN TSDTFEVNDV CAMDKSDGLV GSSSAPALNL  180
APQVVDQMPG SANSTLPKLY CHGTKGPGLC EDDDLYGDFD MDEMDLNLEN YNELFGVSLN  240
HSEELFKNGG IDSLFGAKNM SRAQELIAAE GSSIGRVNAL QQPACSTAAS ADSVMSTKTE  300
PIVSFVPKQA QSNLSFSGVT GESSAGDCQD CGASSMLLMG EPPWCPPGPE NSFQSANRSN  360
AVMRYKEKKK ARKFEKRVRY ASRKARADVR KRVKGRFIKA GEAYDYDPLN QTRTRSY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna15552.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004303586.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9
SwissprotQ9SSE51e-158COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A2P6S1A10.0A0A2P6S1A1_ROSCH; Putative transcription factor interactor and regulator Znf-B family
STRINGXP_004303586.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43623353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.41e-132CONSTANS-like 9