PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna15421.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family WRKY
Protein Properties Length: 168aa    MW: 19034 Da    PI: 7.4361
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna15421.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY78.57.7e-2595144150
                              ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEE CS
                     WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvvei 50 
                              ldDg++WrKYG+K+vk+s++pr+YY+C+ +gCpvkk+ver++edp   +i
  mrna15421.1-v1.0-hybrid  95 LDDGFKWRKYGKKMVKNSPNPRNYYKCSCEGCPVKKRVERDREDPARRKI 144
                              59******************************************987666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-2581141IPR003657WRKY domain
SuperFamilySSF1182907.19E-2288144IPR003657WRKY domain
PROSITE profilePS5081124.01990155IPR003657WRKY domain
SMARTSM007749.9E-1995145IPR003657WRKY domain
PfamPF031066.1E-1896139IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MSNNNFNRSA QTPEDEFSSH PDFEEYLMFG DWLNEDHDYV ASGSTQNSVN QVNDDDSGGS  60
SSQLGGYTNE NGSVPERLEV KERVAFKMKS EIEILDDGFK WRKYGKKMVK NSPNPRNYYK  120
CSCEGCPVKK RVERDREDPA RRKIRAAGAA DVAQPWKTRR GHGMIKS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-1885139761Probable WRKY transcription factor 4
2lex_A8e-1885139761Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna15421.1-v1.0-hybrid
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004303487.11e-102PREDICTED: probable WRKY transcription factor 50
TrEMBLA0A2P6Q1F91e-76A0A2P6Q1F9_ROSCH; Putative transcription factor WRKY family
STRINGXP_004303487.11e-101(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112034110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.11e-34WRKY DNA-binding protein 50