PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna15421.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | WRKY | ||||||||
Protein Properties | Length: 168aa MW: 19034 Da PI: 7.4361 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 78.5 | 7.7e-25 | 95 | 144 | 1 | 50 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEE CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvvei 50 ldDg++WrKYG+K+vk+s++pr+YY+C+ +gCpvkk+ver++edp +i mrna15421.1-v1.0-hybrid 95 LDDGFKWRKYGKKMVKNSPNPRNYYKCSCEGCPVKKRVERDREDPARRKI 144 59******************************************987666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.0E-25 | 81 | 141 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.19E-22 | 88 | 144 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 24.019 | 90 | 155 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.9E-19 | 95 | 145 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.1E-18 | 96 | 139 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MSNNNFNRSA QTPEDEFSSH PDFEEYLMFG DWLNEDHDYV ASGSTQNSVN QVNDDDSGGS 60 SSQLGGYTNE NGSVPERLEV KERVAFKMKS EIEILDDGFK WRKYGKKMVK NSPNPRNYYK 120 CSCEGCPVKK RVERDREDPA RRKIRAAGAA DVAQPWKTRR GHGMIKS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 8e-18 | 85 | 139 | 7 | 61 | Probable WRKY transcription factor 4 |
2lex_A | 8e-18 | 85 | 139 | 7 | 61 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna15421.1-v1.0-hybrid |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004303487.1 | 1e-102 | PREDICTED: probable WRKY transcription factor 50 | ||||
TrEMBL | A0A2P6Q1F9 | 1e-76 | A0A2P6Q1F9_ROSCH; Putative transcription factor WRKY family | ||||
STRING | XP_004303487.1 | 1e-101 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1120 | 34 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26170.1 | 1e-34 | WRKY DNA-binding protein 50 |
Link Out ? help Back to Top | |
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Phytozome | mrna15421.1-v1.0-hybrid |