PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna15401.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB_related
Protein Properties Length: 270aa    MW: 29093.4 Da    PI: 6.0866
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna15401.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.31.1e-15193237347
                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              +W++eE+ +++++v+ lG+g+Wk I++ + ++Rt+ q+ s+ q+y
  mrna15401.1-v1.0-hybrid 193 PWSEEEHRRFLEGVETLGKGDWKGISENFVTTRTRSQVASHAQNY 237
                              8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577563.56E-5324IPR001878Zinc finger, CCHC-type
PROSITE profilePS501589.405320IPR001878Zinc finger, CCHC-type
Gene3DG3DSA:4.10.60.106.8E-5423IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129416.515186242IPR017930Myb domain
SMARTSM007172.2E-11190240IPR001005SANT/Myb domain
SuperFamilySSF466891.72E-15191243IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-17191239IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.7E-11192238IPR009057Homeodomain-like
CDDcd001673.50E-10193238No hitNo description
PfamPF002491.5E-13193237IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MARKCSNCGN IGHNSRTCPS PTSQLKLKGV SDIGPILDDD DDQFSSSSPF SASEFTRKMM  60
DLTSLPSSVG YSWTESTRFI NSCTLAFEME KILLENNQGI GHQEDSDLQP PLAQHRNKSE  120
FLLHLNSNFV AIASLFPAIS NICVLDAAGA TVRNVEEPAW SATVAGANPL TTSVLTGGAA  180
TVTKLLQPPS GVPWSEEEHR RFLEGVETLG KGDWKGISEN FVTTRTRSQV ASHAQNYFHN  240
RQKTAAAAPM APSTKTPTST REHADDVPS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna15401.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004305614.11e-66PREDICTED: uncharacterized protein LOC101311501
STRINGXP_004305614.15e-66(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74840.22e-20MYB_related family protein