PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna15394.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family M-type_MADS
Protein Properties Length: 378aa    MW: 42301.9 Da    PI: 10.0759
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna15394.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF25.71.5e-0837602346
                             HHHHHHHHHT-EEEEEEE-TTSEE CS
                   SRF-TF 23 KAeELSvLCdaevaviifsstgkl 46
                             K  ELSvLCd+ v++i+++++gk+
  mrna15394.1-v1.0-hybrid 37 KVWELSVLCDVIVSLIVIGPDGKV 60
                             667*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500668.7461860IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.03E-81983IPR002100Transcription factor, MADS-box
PfamPF003192.5E-63360IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MAPKNSNNSF VKKLLADNNE YLKAATKATK CHKLKNKVWE LSVLCDVIVS LIVIGPDGKV  60
SKENLDEVKS ILREYWLKKR LDRSSDHLLE VVLEEIKKRT VDIDRNWVPA EELRDMWNSL  120
ESQLEAVIEK TSGVVRDNET SIGEMRKSMM QIDQSFSDTS MPRLQHTSGR LTSGLPRHGE  180
GPSMPQREGQ DIKNAAQATT WQCTTRPGFS FINGSSPRAK LQRLMTVSRQ RSEVTLRDPV  240
SSNVNWSFAG PLHPLARSSS NPGDFHRRRL SKFRRGLSIH QENEFNYQTG RYVFWLAGIL  300
SSGSSSEGPS LWEYSPAKSC ISFPPLRQGL GHQYIGSVTT SRESRHASGT FGRLQSVSIS  360
GNTCYEVPVK PIGIPTP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna15394.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3414722