PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna15394.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 378aa MW: 42301.9 Da PI: 10.0759 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 25.7 | 1.5e-08 | 37 | 60 | 23 | 46 |
HHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 23 KAeELSvLCdaevaviifsstgkl 46 K ELSvLCd+ v++i+++++gk+ mrna15394.1-v1.0-hybrid 37 KVWELSVLCDVIVSLIVIGPDGKV 60 667*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 8.746 | 18 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.03E-8 | 19 | 83 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.5E-6 | 33 | 60 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 378 aa Download sequence Send to blast |
MAPKNSNNSF VKKLLADNNE YLKAATKATK CHKLKNKVWE LSVLCDVIVS LIVIGPDGKV 60 SKENLDEVKS ILREYWLKKR LDRSSDHLLE VVLEEIKKRT VDIDRNWVPA EELRDMWNSL 120 ESQLEAVIEK TSGVVRDNET SIGEMRKSMM QIDQSFSDTS MPRLQHTSGR LTSGLPRHGE 180 GPSMPQREGQ DIKNAAQATT WQCTTRPGFS FINGSSPRAK LQRLMTVSRQ RSEVTLRDPV 240 SSNVNWSFAG PLHPLARSSS NPGDFHRRRL SKFRRGLSIH QENEFNYQTG RYVFWLAGIL 300 SSGSSSEGPS LWEYSPAKSC ISFPPLRQGL GHQYIGSVTT SRESRHASGT FGRLQSVSIS 360 GNTCYEVPVK PIGIPTP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna15394.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF34147 | 2 | 2 |
Link Out ? help Back to Top | |
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Phytozome | mrna15394.1-v1.0-hybrid |