PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna15390.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | MYB | ||||||||
Protein Properties | Length: 295aa MW: 32988 Da PI: 6.7718 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.9 | 4.7e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed++l+d+++ +G g W++I+++ g++R++k+c++rw++yl mrna15390.1-v1.0-hybrid 14 RGAWTALEDQILIDYINTHGEGKWRRIPKEAGLKRCGKSCRLRWLNYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.2 | 3.4e-17 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T+eE++l+++++k+lG++ W++Ia +++ gRt++++k++w++ mrna15390.1-v1.0-hybrid 67 RGNITQEEEDLIIRLHKLLGNR-WSLIAGRIP-GRTDNEIKNYWNTT 111 7999******************.*********.************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.89 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.06E-29 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.8E-15 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.8E-24 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.19E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.227 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 4.4E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-15 | 67 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-24 | 69 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.37E-11 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MGRSPCCVKE GLNRGAWTAL EDQILIDYIN THGEGKWRRI PKEAGLKRCG KSCRLRWLNY 60 LRPGIKRGNI TQEEEDLIIR LHKLLGNRWS LIAGRIPGRT DNEIKNYWNT TLGKKVNNGQ 120 DDVVENKNEK KKNKTKSLTR VLDSIAAVRT KAMRCNSVAV TSHLQPLPLV ETVHGVALDE 180 GIKNSEEDNA TSTTTTTTTT TSTSDDFVLD FDVGKLFNVS ENIPDSSDDY WELCQFGGGN 240 KRLEEEQYGG DINNGGGGSN NYKLSSSASC EPTLFSEEML KEWMKEDCFH HLQS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-27 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH2/EGL3/MYC146, BHLH12/MYC1, or BHLH42/TT8. Involved in the control of flavonoid late metabolism in developing siliques. Plays a key role in determining the tissue-specific activation of leucoanthocyanidin reductase (BANYULS). {ECO:0000269|PubMed:15361138}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna15390.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004305612.1 | 0.0 | PREDICTED: transcription repressor MYB6-like | ||||
Swissprot | Q9FJA2 | 3e-61 | TT2_ARATH; Transcription factor TT2 | ||||
TrEMBL | A0A2P6Q1H9 | 1e-150 | A0A2P6Q1H9_ROSCH; Putative transcription factor MYB-HB-like family | ||||
STRING | XP_004305612.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35550.1 | 6e-61 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna15390.1-v1.0-hybrid |