PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | mrna15385.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 563aa MW: 63945.8 Da PI: 6.1606 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 98.8 | 4.6e-31 | 370 | 454 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+++ev aLi +r+++e ++++ k+plWe+vs+ m++ g++rs k+Ckekwen+nk+++k+k++ kkr s++s+tc+yf+ql+ mrna15385.1-v1.0-hybrid 370 RWPQSEVEALILVRSNIEPKFQEPGHKGPLWEQVSASMASLGYQRSGKRCKEKWENINKYFRKTKDSPKKR-SQQSKTCSYFNQLD 454 8*********************************************************************8.78889********8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.911 | 363 | 427 | IPR017877 | Myb-like domain |
CDD | cd12203 | 4.55E-26 | 369 | 434 | No hit | No description |
Pfam | PF13837 | 5.5E-21 | 369 | 456 | No hit | No description |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 563 aa Download sequence Send to blast |
MQSNFETADL PSQQHFMDTN SSSPVFFNPQ NQTHPSFHQQ QLSHHLVHPI PITHELFQGL 60 HPQPEQEHQS GTAHWQMSPL NFKLGLNENS ASGQAALLDQ NNPLFLQSRQ QNLGFKSWQP 120 QEFSTRKEPF WKPNETEGMN QKQEIQGEMC KELEGKYRLY GELEAIYSLA KIGDVNNRQT 180 GSGSALTNEN SPKNVDLVTP VPFGGSHGLN AVPAAIDGVD DGSEASIEEE VSYRNVQKRK 240 RKRRMKEQMS SSTARFFEGL VKRVMDHQES LHNRYLALIE KMDRERRERE AAWRMQEAEK 300 HKRAAIAQLH EQALASKRES LILSYIEKIT GRKVNIPCRE IPSLLQCDYS NGAREGELTP 360 AKADHETNSR WPQSEVEALI LVRSNIEPKF QEPGHKGPLW EQVSASMASL GYQRSGKRCK 420 EKWENINKYF RKTKDSPKKR SQQSKTCSYF NQLDQLYSRT PITNPPSSSY CSSNPAVSIE 480 RQGYSELLQA VITGSDTGVS ENLSSGNFEL LSEMGSNRLD FDGFTNGKVE HLRENHGREM 540 ENHEDDGSME EEEDIHGDDS DE* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 237 | 243 | KRKRKRR |
2 | 237 | 244 | KRKRKRRM |
3 | 238 | 243 | RKRKRR |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00651 | PBM | Transfer from LOC_Os02g01380 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | mrna15385.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011467225.1 | 0.0 | PREDICTED: trihelix transcription factor GT-2-like | ||||
TrEMBL | A0A2P6Q1N0 | 0.0 | A0A2P6Q1N0_ROSCH; Putative transcription factor MYB family | ||||
STRING | XP_004305610.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13998 | 14 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G76880.1 | 2e-38 | Trihelix family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | mrna15385.1-v1.0-hybrid |