PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna15383.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | MYB | ||||||||
Protein Properties | Length: 224aa MW: 25813.1 Da PI: 9.0954 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 62.3 | 1e-19 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd++l+++++ +G++ Wk++a + g++R++k+c++rw +yl mrna15383.1-v1.0-hybrid 16 RGSWTAEEDQRLAQVIEVYGPRKWKSVATKAGLNRCGKSCRLRWMNYL 63 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.5 | 4.7e-16 | 69 | 114 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ + +E++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l mrna15383.1-v1.0-hybrid 69 RGNISDQEEDLILRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 114 78999*****************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 27.069 | 11 | 67 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.76E-29 | 14 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-15 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-18 | 16 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-24 | 17 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.45E-11 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 20.918 | 68 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9E-15 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-14 | 69 | 114 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-25 | 71 | 119 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.50E-10 | 73 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MVPLSTRSSK SKEVNRGSWT AEEDQRLAQV IEVYGPRKWK SVATKAGLNR CGKSCRLRWM 60 NYLRPNIKRG NISDQEEDLI LRLHKLLGNR WSLIAGRLPG RTDNEIKNYW NSHLSKKIKH 120 NERLQQQNRL LSEPSNPAAK ELLFSSDPQN VELMENNSVS IGIEDTSNSK RQENYFFKSM 180 SFNGSFGDEF LFDGSSAEEG PLNLEWMNRF LEMDESWFTL HGI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-31 | 13 | 118 | 24 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH2/EGL3/MYC146 or BHLH12/MYC1. Regulates the epidermal cell fate specification. Mediates the formation of columellae and accumulation of mucilages on seed coats. Controls the elongation of epidermal cells positively in roots but negatively in stems, leading to the promotion of primary roots elongation and repression of leaves and stems elongation, respectively. Ovoids ectopic root-hair formation, probably by inducing GL2 in roots. Controls trichome initiation and branching. {ECO:0000269|PubMed:11437443, ECO:0000269|PubMed:15361138, ECO:0000269|PubMed:15668208, ECO:0000269|PubMed:15728674}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna15383.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FR828544 | 0.0 | FR828544.1 Rosa rugosa mRNA for putative MYB transcription factor (myb11 gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004303466.1 | 1e-164 | PREDICTED: transcription factor MYB114-like | ||||
Swissprot | Q96276 | 8e-52 | MYB23_ARATH; Transcription factor MYB23 | ||||
TrEMBL | F2QKW4 | 1e-144 | F2QKW4_ROSRU; Putative MYB transcription factor | ||||
STRING | XP_004303466.1 | 1e-164 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2148 | 32 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G40330.1 | 4e-54 | myb domain protein 23 |
Link Out ? help Back to Top | |
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Phytozome | mrna15383.1-v1.0-hybrid |
Publications ? help Back to Top | |||
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