PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna15271.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family Trihelix
Protein Properties Length: 452aa    MW: 51277.4 Da    PI: 6.4594
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna15271.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix68.11.8e-21123218185
                 trihelix   1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tses 75 
                              +Wt++ v++Li ++  ++++  +g           +kk++W+ vsk m  +g+++sp+qC++k+++lnkryk+++++ +++ ++++
  mrna15271.1-v1.0-hybrid 123 KWTDRVVRLLISVVACVGDDGVEGGeglkrksavlQKKGKWKTVSKIMIGKGCHVSPQQCEDKFNDLNKRYKRLNDILGRGtSCRV 208
                              7**************77777777644556667888**********************************************66999 PP

                 trihelix  76 sstcpyfdql 85 
                              +++ ++ d++
  mrna15271.1-v1.0-hybrid 209 VENPSLMDSM 218
                              9999999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.7E-18121245No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MDGSGLGGGF LSGPSGGTLD LESSIPRHQE KQMGHPVLAH HQRVNVMSGV GVDRCPVGLV  60
EVKGSIPRGA SMNVVKGKGV APFYTSNAYN LSEEDEPSYN EDGNDESLEG VKGKKGSTWQ  120
RMKWTDRVVR LLISVVACVG DDGVEGGEGL KRKSAVLQKK GKWKTVSKIM IGKGCHVSPQ  180
QCEDKFNDLN KRYKRLNDIL GRGTSCRVVE NPSLMDSMPH LSAKAKDDVR KILSSKQLFY  240
KEMCAYHNGQ WIPGCHDLDL QGDPLRPGRC STDNNVSEEE GVEEHHDTED DGSDNEDNNA  300
DGSDRDRMGR TGDRKRSSEE DDHFWQHVSL DTFEVEMAEV LQDPTKSLWE RREWINKQKL  360
RLQQQRVNCE AEDLELEKQR YRWLRYRSKK DRELERLRLE NERMKLENEK RVLQLRQKEL  420
EIDVRRSEAS LEPSVGIDRL LGRDLDLGRH Q*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna15271.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004291801.10.0PREDICTED: uncharacterized protein LOC101300312
TrEMBLA0A2P6QFE90.0A0A2P6QFE9_ROSCH; Uncharacterized protein
STRINGXP_004291801.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105463240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.12e-65sequence-specific DNA binding transcription factors