PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna15264.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

FAR1

Protein Properties

Length: 515aa MW: 57607 Da PI: 8.3452

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna15264.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	54	5.4e-17	133	197	1	68
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkv 68 kfYn+YA e+GFsvr+s++ ksk++ ei++++f+C+keg++++++ ++ ++++ rtgC ak++ mrna15264.1-v1.0-hybrid 133 KFYNKYAFEAGFSVRRSTTAKSKDDSEIIRQEFCCYKEGHSKKKT---VQPKKQKGIVRTGCLAKIVA 197 6************************************998875...5699999*******9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.2E-14	133	198	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	10.88	296	328	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.2E-6	299	322	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.2E-6	303	331	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 515 aa Download sequence Send to blast
MSLRSPSYGT GDSAPPPPAD ASSVPDHFPS PTSPSNSSFP ARSPKTSNKI NLAGKLEFGG 60 LTGEGKWSGT LLESAGGGGA PSPALTETMF QEAITLESLP CSVETTKVYT PQVADVFMPT 120 KNLEFRTLEE LYKFYNKYAF EAGFSVRRST TAKSKDDSEI IRQEFCCYKE GHSKKKTVQP 180 KKQKGIVRTG CLAKIVANCV WNSEMPKEFD NKWKEVVERS SISDNGWLQS IYDIRASWVL 240 AYCNHIFSAG MSSSQRAESC HSFFKKFQLM REDDNQRVYM VKKRSDQIQK DRKIAYDKHT 300 DLASCTCKKF ESEGIPCRHI LGYLLKVQEV DQLPAQYISN RWTKVANVDV VKDLDGLEII 360 DTNALVVKRS KLFHHASLVS GKVLTSPDEA QTIFIEALDN VLDKLKQMQA SSSESARIGK 420 KLPTDLQHRY NEPTEVKAKG SGKRLKKTKE QAKRKRSTTR KCHECGLYGQ SHDKRICPTL 480 SIDKESSLLD KSKDEELGSF DEEDSSSYDE DDEN*

Sequence ? help Back to Top

Protein Sequence Length: 515 aa Download sequence Send to blast

MSLRSPSYGT GDSAPPPPAD ASSVPDHFPS PTSPSNSSFP ARSPKTSNKI NLAGKLEFGG  60
LTGEGKWSGT LLESAGGGGA PSPALTETMF QEAITLESLP CSVETTKVYT PQVADVFMPT  120
KNLEFRTLEE LYKFYNKYAF EAGFSVRRST TAKSKDDSEI IRQEFCCYKE GHSKKKTVQP  180
KKQKGIVRTG CLAKIVANCV WNSEMPKEFD NKWKEVVERS SISDNGWLQS IYDIRASWVL  240
AYCNHIFSAG MSSSQRAESC HSFFKKFQLM REDDNQRVYM VKKRSDQIQK DRKIAYDKHT  300
DLASCTCKKF ESEGIPCRHI LGYLLKVQEV DQLPAQYISN RWTKVANVDV VKDLDGLEII  360
DTNALVVKRS KLFHHASLVS GKVLTSPDEA QTIFIEALDN VLDKLKQMQA SSSESARIGK  420
KLPTDLQHRY NEPTEVKAKG SGKRLKKTKE QAKRKRSTTR KCHECGLYGQ SHDKRICPTL  480
SIDKESSLLD KSKDEELGSF DEEDSSSYDE DDEN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna15264.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004293183.1	0.0	PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like
STRING	XP_004293183.1	0.0	(Fragaria vesca)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	3e-11	FAR1 family protein

Link Out ? help Back to Top
Phytozome	mrna15264.1-v1.0-hybrid