PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna15237.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family DBB
Protein Properties Length: 1189aa    MW: 130846 Da    PI: 4.4662
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna15237.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.54.2e-06878918438
                 zf-B_box   4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 
                                C+ +++ e++ fC+ ++  lC+ C    H+       H+
  mrna15237.1-v1.0-hybrid 878 IQCDVCNKDEASVFCTADEAALCDGCDHRVHHAnklaskHQ 918
                              57******99******************9964446666666 PP

2zf-B_box23.11.5e-07932968438
                 zf-B_box   4 rkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 
                              + C+ ++e ++ lfC++++  lC++C + +H+   Ht
  mrna15237.1-v1.0-hybrid 932 PLCDICQERRAFLFCQQDRAILCRECDVPIHSAneHT 968
                              68*****************************657765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF133253.5E-151679IPR025999Microspherule protein, N-terminal domain
SuperFamilySSF498791.58E-7764853IPR008984SMAD/FHA domain
CDDcd000603.68E-8775868No hitNo description
Gene3DG3DSA:2.60.200.208.0E-6775852IPR000253Forkhead-associated (FHA) domain
SMARTSM002400.0037781838IPR000253Forkhead-associated (FHA) domain
PROSITE profilePS500069.992782838IPR000253Forkhead-associated (FHA) domain
PfamPF004981.3E-6783853IPR000253Forkhead-associated (FHA) domain
PROSITE profilePS5011910.68875922IPR000315B-box-type zinc finger
SMARTSM003364.2E-8875922IPR000315B-box-type zinc finger
CDDcd000214.16E-6878922No hitNo description
PROSITE profilePS501199.542929976IPR000315B-box-type zinc finger
SMARTSM003366.2E-14929976IPR000315B-box-type zinc finger
CDDcd000211.24E-10932975No hitNo description
PfamPF006433.3E-6932968IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 1189 aa     Download sequence    Send to blast
MAGDAALARS SAVGAWIPAD DVLLKNAVEA GASLESLAKG AVHFSRRFTV QELQDRWYSI  60
LYDPVVAEEA SARMAEFEFA TPNFASKFSR VGCSKENKCA PGKRKAESVR SSYSALRKRI  120
CSEPFDSMDL SFILAPSDSN YIVNGDEPLS EHVMTGDPIA HNFGLDGSDM DNTMHQTFPQ  180
DLMHDSTVIG GIETADTFGG LQKPTEEDFL VEQDNLHEEV PYIEDNLPIT GNGSEVNEFG  240
QPKDLLDCSM FSAGNSGMEP PCSLDQINND GVHLCSPFEG NQVLNVTASE STASFHDLEY  300
STQLPESHIW STVPATSVPV DIGPRENDTC TRDSFELLDV IGAKNTTISG YNVDLGPEVK  360
VSDFKSPAIT DVYLAELSNS LLNFTNEEEL MFKDEIDKSY YDGLSSLLMS SPKDDIEEHM  420
INRIEPGTSM APPMYPMDPS CIGPALADDI RGSLPDDDMN CHPEMLMQSS PTASNSQFPE  480
YKDGVICCTL NTEEWEIPCN DDVIFHNHVP LSSTHCKVKE DSEPKPICAS VKDLTVNQRK  540
GDTRRKVPSL MPKEQRNPGK SHCILEVSSK QPLSDFEPSK TNPVDVASTS TCHVSGNWGQ  600
IDSAKAITNP LPGIMEEDST LTNCLGYTST ESHMAHPHLD YDCVRSYPEP YATETDWEPD  660
ASATIRDHPS LLAEVAPMDD AVLEPEVNPM TSDFEGLLES DDDIPCYSDI EAMILDMDLD  720
PDDQEMYSGE EVSRYQDEDT KRAIMRLEQG AYSYMQRAIA SHGAFAILYG RHSKHFIKKP  780
EVLLGRTTND LIVDIDLARE GSGNKVSRQQ ATLKMEKDGS FYLKNLGSCS ISVNSTELTP  840
GQSLRLSSSC LIEPSSLGQF YLQILIIVFH SQLLHMKIQC DVCNKDEASV FCTADEAALC  900
DGCDHRVHHA NKLASKHQRF SLIHPSSSKL SPLCDICQER RAFLFCQQDR AILCRECDVP  960
IHSANEHTQK HNRFLFTGVK LSATSTVYTS TESAAVTDPK PQPLINKKQP VPVSSSISNP  1020
FSVPKISTTT TTTTSVPKIS TSTKSGASLI PNDGVGSVSS ISEYLTETLP GWHVEDLLDI  1080
SSNHPFGFCK ADNEALPYFD DDIQSNLSSF SSQNPGIWVP QASNPSLQHS QMGFKETTKE  1140
AATNMNMIKA NYNSNHISNY RSMWNVDDSF TVPQISPPSV GSKRYRPF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna15237.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0248260.0EU024826.1 Fragaria vesca subsp. americana clone fosmid 08G19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004293189.10.0PREDICTED: uncharacterized protein LOC101301268
TrEMBLA0A2P6PYY90.0A0A2P6PYY9_ROSCH; Putative transcription factor interactor and regulator FHA-SMAD family
STRINGXP_004293189.10.0(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.16e-80salt tolerance homolog2