PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna15237.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | DBB | ||||||||
Protein Properties | Length: 1189aa MW: 130846 Da PI: 4.4662 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 18.5 | 4.2e-06 | 878 | 918 | 4 | 38 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 C+ +++ e++ fC+ ++ lC+ C H+ H+ mrna15237.1-v1.0-hybrid 878 IQCDVCNKDEASVFCTADEAALCDGCDHRVHHAnklaskHQ 918 57******99******************9964446666666 PP | |||||||
2 | zf-B_box | 23.1 | 1.5e-07 | 932 | 968 | 4 | 38 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 + C+ ++e ++ lfC++++ lC++C + +H+ Ht mrna15237.1-v1.0-hybrid 932 PLCDICQERRAFLFCQQDRAILCRECDVPIHSAneHT 968 68*****************************657765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13325 | 3.5E-15 | 16 | 79 | IPR025999 | Microspherule protein, N-terminal domain |
SuperFamily | SSF49879 | 1.58E-7 | 764 | 853 | IPR008984 | SMAD/FHA domain |
CDD | cd00060 | 3.68E-8 | 775 | 868 | No hit | No description |
Gene3D | G3DSA:2.60.200.20 | 8.0E-6 | 775 | 852 | IPR000253 | Forkhead-associated (FHA) domain |
SMART | SM00240 | 0.0037 | 781 | 838 | IPR000253 | Forkhead-associated (FHA) domain |
PROSITE profile | PS50006 | 9.992 | 782 | 838 | IPR000253 | Forkhead-associated (FHA) domain |
Pfam | PF00498 | 1.3E-6 | 783 | 853 | IPR000253 | Forkhead-associated (FHA) domain |
PROSITE profile | PS50119 | 10.68 | 875 | 922 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 4.2E-8 | 875 | 922 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.16E-6 | 878 | 922 | No hit | No description |
PROSITE profile | PS50119 | 9.542 | 929 | 976 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 6.2E-14 | 929 | 976 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.24E-10 | 932 | 975 | No hit | No description |
Pfam | PF00643 | 3.3E-6 | 932 | 968 | IPR000315 | B-box-type zinc finger |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root | ||||
PO:0007134 | developmental stage | sporophyte vegetative stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 1189 aa Download sequence Send to blast |
MAGDAALARS SAVGAWIPAD DVLLKNAVEA GASLESLAKG AVHFSRRFTV QELQDRWYSI 60 LYDPVVAEEA SARMAEFEFA TPNFASKFSR VGCSKENKCA PGKRKAESVR SSYSALRKRI 120 CSEPFDSMDL SFILAPSDSN YIVNGDEPLS EHVMTGDPIA HNFGLDGSDM DNTMHQTFPQ 180 DLMHDSTVIG GIETADTFGG LQKPTEEDFL VEQDNLHEEV PYIEDNLPIT GNGSEVNEFG 240 QPKDLLDCSM FSAGNSGMEP PCSLDQINND GVHLCSPFEG NQVLNVTASE STASFHDLEY 300 STQLPESHIW STVPATSVPV DIGPRENDTC TRDSFELLDV IGAKNTTISG YNVDLGPEVK 360 VSDFKSPAIT DVYLAELSNS LLNFTNEEEL MFKDEIDKSY YDGLSSLLMS SPKDDIEEHM 420 INRIEPGTSM APPMYPMDPS CIGPALADDI RGSLPDDDMN CHPEMLMQSS PTASNSQFPE 480 YKDGVICCTL NTEEWEIPCN DDVIFHNHVP LSSTHCKVKE DSEPKPICAS VKDLTVNQRK 540 GDTRRKVPSL MPKEQRNPGK SHCILEVSSK QPLSDFEPSK TNPVDVASTS TCHVSGNWGQ 600 IDSAKAITNP LPGIMEEDST LTNCLGYTST ESHMAHPHLD YDCVRSYPEP YATETDWEPD 660 ASATIRDHPS LLAEVAPMDD AVLEPEVNPM TSDFEGLLES DDDIPCYSDI EAMILDMDLD 720 PDDQEMYSGE EVSRYQDEDT KRAIMRLEQG AYSYMQRAIA SHGAFAILYG RHSKHFIKKP 780 EVLLGRTTND LIVDIDLARE GSGNKVSRQQ ATLKMEKDGS FYLKNLGSCS ISVNSTELTP 840 GQSLRLSSSC LIEPSSLGQF YLQILIIVFH SQLLHMKIQC DVCNKDEASV FCTADEAALC 900 DGCDHRVHHA NKLASKHQRF SLIHPSSSKL SPLCDICQER RAFLFCQQDR AILCRECDVP 960 IHSANEHTQK HNRFLFTGVK LSATSTVYTS TESAAVTDPK PQPLINKKQP VPVSSSISNP 1020 FSVPKISTTT TTTTSVPKIS TSTKSGASLI PNDGVGSVSS ISEYLTETLP GWHVEDLLDI 1080 SSNHPFGFCK ADNEALPYFD DDIQSNLSSF SSQNPGIWVP QASNPSLQHS QMGFKETTKE 1140 AATNMNMIKA NYNSNHISNY RSMWNVDDSF TVPQISPPSV GSKRYRPF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna15237.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU024826 | 0.0 | EU024826.1 Fragaria vesca subsp. americana clone fosmid 08G19, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004293189.1 | 0.0 | PREDICTED: uncharacterized protein LOC101301268 | ||||
TrEMBL | A0A2P6PYY9 | 0.0 | A0A2P6PYY9_ROSCH; Putative transcription factor interactor and regulator FHA-SMAD family | ||||
STRING | XP_004293189.1 | 0.0 | (Fragaria vesca) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75540.1 | 6e-80 | salt tolerance homolog2 |
Link Out ? help Back to Top | |
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Phytozome | mrna15237.1-v1.0-hybrid |