PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna15202.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family TALE
Protein Properties Length: 663aa    MW: 74135.9 Da    PI: 5.3362
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna15202.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.98.4e-094124442254
                              SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                 Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                               +yp+ +e+  LA+++gLt +qV +WF N R +
  mrna15202.1-v1.0-hybrid 412 LPYPKDSEKVMLARQTGLTRNQVANWFINARVR 444
                              69*****************************88 PP
2BELL1131.6e-36270341172
                     BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                              erq+lq+kk+kL+s+l+eVd+rYk+y++q+q v+  F+ +ag g+a+pYt+lAl+aiSrhFr+L dai++qi
  mrna15202.1-v1.0-hybrid 270 ERQDLQNKKTKLVSMLDEVDRRYKHYYHQMQNVVQFFDKAAGNGAAAPYTALALQAISRHFRSLHDAIKGQI 341
                              799*******************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.3E-56200339IPR006563POX domain
PfamPF075263.5E-48206337IPR006563POX domain
PROSITE profilePS5007111.807385448IPR001356Homeobox domain
SMARTSM003892.6E-9388452IPR001356Homeobox domain
SuperFamilySSF466891.8E-16388456IPR009057Homeodomain-like
CDDcd000861.23E-11388449No hitNo description
Gene3DG3DSA:1.10.10.603.6E-26391454IPR009057Homeodomain-like
PfamPF059201.1E-15405444IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 663 aa     Download sequence    Send to blast
MATYFQNLSN QNLLTPYPGD EKLASYPEQP SNNMMMYLNQ ASYPGSYTEV LSGGSFSPNK  60
CAESDGGRNE MMFIPPTSGP VRDCVGGDSL IGSLDGKRGM QDHGLSLSLG TQIPPAGSVP  120
SFQYQYLNSS LPSVLSTSQI LGKGEFQCKG DDYSQSDEFR NFENLTSGLY DSLKTQNFSN  180
PMCSMIPKEM HPEAYMYDSL GFSNSLVNSK YLKAAQQLLD EVVNVRKALK QSRSNKHQRT  240
DGSKENDGIR MSSDPSEASA VSSVELSPAE RQDLQNKKTK LVSMLDEVDR RYKHYYHQMQ  300
NVVQFFDKAA GNGAAAPYTA LALQAISRHF RSLHDAIKGQ IQAAQRSLGE KDTPSEAQGE  360
VIPRLRYVDQ QLRQQRAFQQ HGVMQHSWRP QRGLPESSVA ILRAWLFEHF LLPYPKDSEK  420
VMLARQTGLT RNQVANWFIN ARVRLWKPMI EEMYKEEFGE DMDSKSSPEN RLKEARVDFS  480
SEDRRDELQE SLMSATADSV EPGQLHDSKS GITKLQDHGQ RSNADDRGLY MDANENAIAT  540
YDMSGLGNAI GSEVSLALEL RHCEEHDEFP APNGSEVRGN DPEASLDCYY GDPGQQQYRF  600
AVPNLGAYSS RRLKLLAMEI DVDACMIPTC NITEIGESLA LVIYVKINCK DKMKQYLVHS  660
ME*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A9e-15394452563Homeobox protein Meis2
4xrm_B9e-15394452563Homeobox protein Meis2
4xrs_A8e-15394451158Homeobox protein Meis1
4xrs_B8e-15394451158Homeobox protein Meis1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:16513846}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna15202.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004291834.10.0PREDICTED: BEL1-like homeodomain protein 3
SwissprotQ9FWS91e-116BLH3_ARATH; BEL1-like homeodomain protein 3
TrEMBLA0A2P6PYV60.0A0A2P6PYV6_ROSCH; Putative transcription factor Homobox-WOX family
STRINGXP_004291834.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21463179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75410.27e-94BEL1-like homeodomain 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]