PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna15201.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family TALE
Protein Properties Length: 400aa    MW: 44532.1 Da    PI: 6.7693
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna15201.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.81e-093223591954
                              HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                 Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                              Fe   ++yp+ +e+  LA+++gL+++qV++WF N R +
  mrna15201.1-v1.0-hybrid 322 FEHflHPYPNDSEKLMLASQTGLSKNQVSNWFINARVR 359
                              664459******************************88 PP
2BELL98.36.3e-32184254272
                     BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                              ++e q k+a L++lleeV++r ++y++q++ v+ sFe+v+g g+ak+Yt+lAlka+SrhF +L+dai+++i
  mrna15201.1-v1.0-hybrid 184 KHEFQTKIANLITLLEEVEDRSEKYYHQMEEVMQSFEMVVGAGAAKSYTALALKAMSRHFGSLRDAIMSHI 254
                              789*****************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005745.0E-32114252IPR006563POX domain
PfamPF075262.5E-39119251IPR006563POX domain
SMARTSM003892.1E-9303367IPR001356Homeobox domain
CDDcd000861.24E-11303364No hitNo description
Gene3DG3DSA:1.10.10.607.5E-27308369IPR009057Homeodomain-like
SuperFamilySSF466891.75E-17309371IPR009057Homeodomain-like
PfamPF059202.6E-17320359IPR008422Homeobox KN domain
PROSITE profilePS5007111.855322363IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009001anatomyfruit
PO:0007010developmental stagewhole plant fruit ripening stage
PO:0007027developmental stagewhole plant fruit formation stage 70% to final size
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MAAQHHMENQ HQLDAAYSNF RTSTSTYPGQ LPSIHSLEER MSRSLDLLHA PPTAEGSDHM  60
SHTRLLMDQH QALSLSLGSQ MLLPHNSHSA HYVSDDYSFM GNALASSSNS LNQQSLGAVI  120
GNSRYLKPAQ SLLEELVSVG GKSVDISTEK HVGKVYGGGR RGSMSLSSEL KAELCCNGLM  180
SADKHEFQTK IANLITLLEE VEDRSEKYYH QMEEVMQSFE MVVGAGAAKS YTALALKAMS  240
RHFGSLRDAI MSHINAEKRK LMQDFPKVSS GLAQLSLYDR ECRQKRMSLQ QLGIIHGQRQ  300
GAWRPIRGLP ETSVAILRTW LFEHFLHPYP NDSEKLMLAS QTGLSKNQVS NWFINARVRL  360
WKPMIEEMYK EEFADSSQDS NPVASGSMTG ESNTDHTDD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A5e-16309366158Homeobox protein Meis1
4xrs_B5e-16309366158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna15201.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004291836.10.0PREDICTED: BEL1-like homeodomain protein 11
SwissprotQ1PFD11e-108BLH11_ARATH; BEL1-like homeodomain protein 11
TrEMBLA0A2P6PYU50.0A0A2P6PYU5_ROSCH; Putative transcription factor Homobox-WOX family
STRINGXP_004291835.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF126452329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.11e-104BEL1-like homeodomain 11