PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna15193.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bZIP
Protein Properties Length: 172aa    MW: 19140.2 Da    PI: 7.0909
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna15193.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_147.44.2e-152987563
                             CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                             ++ +r+q+NRe+ArrsR RK++ ++eL+  v++L +eN +    ++  ++++ ++++e+
  mrna15193.1-v1.0-hybrid 29 RKRKRMQSNRESARRSRMRKQQHLDELTAQVAQLRKENGQILTSINITTQHYMNVEAEN 87
                             6789************************************9999999999888887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.4E-202589IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.9672790IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.6E-112774No hitNo description
SuperFamilySSF579591.75E-122981No hitNo description
PfamPF001701.3E-112983IPR004827Basic-leucine zipper domain
CDDcd147026.09E-213081No hitNo description
PROSITE patternPS0003603247IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MATSSGNSSG SQLHNSGSEG DLQHAIDQRK RKRMQSNRES ARRSRMRKQQ HLDELTAQVA  60
QLRKENGQIL TSINITTQHY MNVEAENSVL KAQMAELSQR LDSLTEILNY INGNNNINSN  120
NNGVFETEPA GQLLQTGSTA ADHNSSFMMN PWNNLLYSNL PIMATADMLQ Y*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14148RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna15193.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004291844.11e-123PREDICTED: ocs element-binding factor 1-like
SwissprotC0Z2L54e-45BZP44_ARATH; bZIP transcription factor 44
TrEMBLA0A2P6PYV12e-85A0A2P6PYV1_ROSCH; Putative transcription factor bZIP family
STRINGXP_004291844.11e-122(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61334147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.15e-46basic leucine-zipper 44
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]