PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna15090.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family M-type_MADS
Protein Properties Length: 225aa    MW: 25265.1 Da    PI: 8.3363
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna15090.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF79.22.9e-251765149
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                             krien+sn+qvtfskRr+g++KKA ELSvLC+a  avi+fss +k++ y
  mrna15090.1-v1.0-hybrid 17 KRIENTSNKQVTFSKRRAGLFKKAGELSVLCGAHMAVIVFSSANKVFCY 65
                             79*******************************************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006627.684969IPR002100Transcription factor, MADS-box
SMARTSM004322.0E-34968IPR002100Transcription factor, MADS-box
CDDcd002656.73E-391080No hitNo description
SuperFamilySSF554553.92E-281079IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001165IPR002100Transcription factor, MADS-box
PRINTSPR004046.8E-231131IPR002100Transcription factor, MADS-box
PfamPF003197.6E-241865IPR002100Transcription factor, MADS-box
PRINTSPR004046.8E-233146IPR002100Transcription factor, MADS-box
PRINTSPR004046.8E-234667IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MDTMLKKTQG RKKIEIKRIE NTSNKQVTFS KRRAGLFKKA GELSVLCGAH MAVIVFSSAN  60
KVFCYGHPDI HAVIESYQNG LSSVVGADDK AQEVLIAEYN KLCEEKHKEE EELKKKMAEA  120
KAEASEKKTM MEMGMTGVQV LNEGFWWDEP VDLVRLEERE RQKYMMALET LRNKVADRAH  180
HKKIMSGTVA GTSLPPVHRL HMMAPDNCFG TDFGDQFGNH GFGV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P5e-191077269Myocyte-specific enhancer factor 2B
1tqe_Q5e-191077269Myocyte-specific enhancer factor 2B
1tqe_R5e-191077269Myocyte-specific enhancer factor 2B
1tqe_S5e-191077269Myocyte-specific enhancer factor 2B
6c9l_A5e-191077269Myocyte-specific enhancer factor 2B
6c9l_B5e-191077269Myocyte-specific enhancer factor 2B
6c9l_C5e-191077269Myocyte-specific enhancer factor 2B
6c9l_D5e-191077269Myocyte-specific enhancer factor 2B
6c9l_E5e-191077269Myocyte-specific enhancer factor 2B
6c9l_F5e-191077269Myocyte-specific enhancer factor 2B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna15090.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004293224.11e-168PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A2P6PYJ01e-121A0A2P6PYJ0_ROSCH; Putative transcription factor MADS-type1 family
STRINGXP_004293224.11e-168(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-26AGAMOUS-like 62