PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna15053.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 491aa    MW: 55056.9 Da    PI: 9.5782
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna15053.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.62.2e-1822108599
                              -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                       B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                              +  s  l+s+rl +p +f+ +++g +  s  ++l  +sg++W+v l    + g  ++  GW  Fv+++ L+ gDf++F++dg+  f
  mrna15053.1-v1.0-hybrid  22 F--SADLSSDRLKIPERFMIHMEGRT--SGVVVLSGPSGNVWNVHL--IEQNGDLFFHYGWPAFVRDHSLECGDFLIFRYDGELHF 101
                              4..778999**********9998884..44899999**********..88888899************************996666 PP

                              ..EEEEE-S CS
                       B3  91 elvvkvfrk 99 
                                +v+vf++
  mrna15053.1-v1.0-hybrid 102 --TVQVFDQ 108
                              ..9999987 PP
2B346.37.8e-151942701794
                              E--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                       B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                               +p kf  +h   ++++++++l +++g+sW+v+    ++   +++l +GW  Fv+ n++k gD++vF+l+++ ef+ ++
  mrna15053.1-v1.0-hybrid 194 NIPYKFSVAHL--PNCKVKIVLLNLKGESWTVNSVPtTRVHTSHTLCGGWMAFVRYNDIKLGDICVFELVRECEFRVHI 270
                              59999998886..46999***************954566666799*************************999996655 PP
3B352.49.6e-17378471197
                              EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE- CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkld 85 
                              f+k++++ + + s  l +p +f +eh   ++ +++++l++++g+sW+v+   + k++  +++ +GW  Fv+ n+++ gD+++F+l+
  mrna15053.1-v1.0-hybrid 378 FVKIMKKFNISGSYTLKIPYQFSTEHL--PNFKTEIVLQNSKGESWTVNSVPDSKGRVvHTFCGGWMAFVRGNNINIGDICIFELV 461
                              778888888888889***********5..346679***************5544444379999*********************99 PP

                              SSSEE..EEEEE CS
                       B3  86 grsefelvvkvf 97 
                              g  ++e++v++ 
  mrna15053.1-v1.0-hybrid 462 G--KREMRVHIS 471
                              8..555677765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.04E-2411111IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.5E-2411111IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.49416109IPR003340B3 DNA binding domain
CDDcd100178.35E-2116107No hitNo description
SMARTSM010191.2E-1318109IPR003340B3 DNA binding domain
PfamPF023623.5E-1620108IPR003340B3 DNA binding domain
SMARTSM010191.6E-8185274IPR003340B3 DNA binding domain
SuperFamilySSF1019361.1E-18193270IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.7E-18193270IPR015300DNA-binding pseudobarrel domain
PfamPF023628.1E-12195270IPR003340B3 DNA binding domain
CDDcd100173.08E-15195270No hitNo description
PROSITE profilePS5086311.491195274IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.2E-24370474IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-24371473IPR015300DNA-binding pseudobarrel domain
CDDcd100173.37E-20376470No hitNo description
SMARTSM010192.7E-14378474IPR003340B3 DNA binding domain
PfamPF023622.1E-14378470IPR003340B3 DNA binding domain
PROSITE profilePS5086313.831378474IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MADEALRVMM PNPRRPHFFA FFSADLSSDR LKIPERFMIH MEGRTSGVVV LSGPSGNVWN  60
VHLIEQNGDL FFHYGWPAFV RDHSLECGDF LIFRYDGELH FTVQVFDQTA CEKEAAFHTR  120
CGQSSSYFEK LVGRKRAREE GCGLDRLFEE STSSQHTKPY ENPGLDVVIF KAKQAIQNSL  180
NDRNSMQITP AHENIPYKFS VAHLPNCKVK IVLLNLKGES WTVNSVPTTR VHTSHTLCGG  240
WMAFVRYNDI KLGDICVFEL VRECEFRVHI QTGESSSRLC APITLKGLSK KAKGNSSKVH  300
TKSLRKIEMA ETRKHGNTSK SIAKGALSSQ SKAASKKLAT RRKKTVEDDQ GSKAELRMRL  360
SLVEEKAAQS FTSCFPSFVK IMKKFNISGS YTLKIPYQFS TEHLPNFKTE IVLQNSKGES  420
WTVNSVPDSK GRVVHTFCGG WMAFVRGNNI NIGDICIFEL VGKREMRVHI SGADKNGFDH  480
QAGEATTNAV *
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna15053.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004291931.10.0PREDICTED: B3 domain-containing protein Os11g0197600-like
TrEMBLA0A2P6PYE80.0A0A2P6PYE8_ROSCH; Putative transcription factor B3-Domain family
STRINGXP_004291931.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114703238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.15e-20B3 family protein