PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna15023.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 683aa    MW: 77742.4 Da    PI: 8.6686
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna15023.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.68.3e-174465261299
                              HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                       B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                               ++ l +p  f+++  g +  +++ +l+d++g+sW+v+l  + + g+ ++ +GW +Fvk + L+egDf+v++++g+++f   vk++
  mrna15023.1-v1.0-hybrid 446 CRH-LKMPTAFVDKLRGTP--PFKCVLRDPDGQSWNVTL--KERAGGLFFCTGWPKFVKHHCLDEGDFLVLYYTGKHKF--DVKIY 524
                              455.889999999998775..568***************..99999*99999*********************998888..88888 PP

                              -S CS
                       B3  98 rk 99 
                              ++
  mrna15023.1-v1.0-hybrid 525 DE 526
                              75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.8E-20433529IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-22436532IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.9E-11437527IPR003340B3 DNA binding domain
CDDcd100174.16E-17437525No hitNo description
PfamPF023626.6E-14449525IPR003340B3 DNA binding domain
PROSITE profilePS5086312.435449527IPR003340B3 DNA binding domain
SuperFamilySSF1019363.73E-14566662IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-13566662IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.305570664IPR003340B3 DNA binding domain
CDDcd100171.85E-6572654No hitNo description
SMARTSM010192.2E-5573665IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 683 aa     Download sequence    Send to blast
MQSCRNLPKP TLSPQSTTSW HRSLQTKKVP SCFTSSTSML YNSRPSRPSL SIKDEPVLLK  60
AGEFVCEDNN LANTALDSLG ITVDSIEKPP LSDNQSLFEG EGKSAYQKHT LIERLGLLLY  120
SMEVEEVKHE GTFLVWRDLY HDVVDWGLKV GFGKFLQLCM LAHHGYLHTL LSPCSIFPFK  180
RFHLKEENSK ENHTPMHKPS HAKLRYDMFI AWHNSVHAKY QKRKQIGEIS YLELSKPWRL  240
EKPLPNESVL SKTDARARPS ELLQQRKKRE EEKEKSTTAL AFEPSRSPHY KLLVFWFAGH  300
DPSEFNLDIY SSRLKVGDLS ISDADPDNCF LSLDPYYEYT YIRGVYCNGA VHWESHCGSH  360
LHLIDICSSR IKVLEMKSDY SGFCYFVSSF LVESFGPRSP SAAAASAFRV FPGDPIDYCL  420
SLSSLTQVQM AASKEAFFQV LIGDFCRHLK MPTAFVDKLR GTPPFKCVLR DPDGQSWNVT  480
LKERAGGLFF CTGWPKFVKH HCLDEGDFLV LYYTGKHKFD VKIYDESACE MDLEVSKRRR  540
LTDGSSDQVM SGKAVIEETP SGLTVFKSKY SCFMKTLVKC KLYEMTIPRR IVIAEGLEKG  600
KPVKLQDPKK RSQIVNTNVT KDGRFKLTKG WSQSCREFEI SIGDNIVFEF VKPNVILVHN  660
LRGKVVILEG PKVVDSSNYK KL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1536540KRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna15023.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71851546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.13e-15B3 family protein