PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna15016.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 507aa    MW: 56362.5 Da    PI: 8.3546
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna15016.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.11.4e-17198287198
                              EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                              f+kv++ps+v+   +l lp +f+++h+++  +++++tlede+g++++ k+    ++ +  l++GW++F   ++L +g ++vF+ + 
  mrna15016.1-v1.0-hybrid 198 FVKVMLPSHVSGGFWLGLPARFCQKHMES--SDQDITLEDEDGEKFTTKY--LAGKMG--LSAGWRGFSLKHRLVQGYVLVFHKV- 276
                              89************************866..6679***************..666655..9**********************44. PP

                              SSEE..EEEEE- CS
                       B3  87 rsefelvvkvfr 98 
                               ++++++v +++
  mrna15016.1-v1.0-hybrid 277 -ETQKFKVYICK 287
                              .66666999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.6E-20194289IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-20195289IPR015300DNA-binding pseudobarrel domain
CDDcd100175.50E-25196287No hitNo description
SMARTSM010193.4E-19198289IPR003340B3 DNA binding domain
PfamPF023621.2E-15198287IPR003340B3 DNA binding domain
PROSITE profilePS5086311.547198289IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MAEKLSRIGS IQRLNQQKAV GSYCYRKVLI GWYKGLGESE GWLEAIGAAD DDVVGRDLMA  60
PIGGRVVRWW RWKKRVIRLI RKTDRELLAC LGAASTVMSS RERVWRCFWS GDEDMLVKLL  120
KGGCPDFSRG DENSGALACE DSETTTSMAK KSSKVACGSS KKAARRPERL KPSPSQKSLL  180
LEKANDIADQ LPLKYPNFVK VMLPSHVSGG FWLGLPARFC QKHMESSDQD ITLEDEDGEK  240
FTTKYLAGKM GLSAGWRGFS LKHRLVQGYV LVFHKVETQK FKVYICKPNT TKQVKFAADV  300
SQTAVNDTQM AVDTQTTAFN SPTSSELSED LLYIMGDHDE GSTEGGDVSS YIDGFEDNSD  360
CVLLERPGLP ESAATPFKEV TCFDTFKVMF NGRNINSQIP KVVLKKYYEL CSSQSSHLHQ  420
HVVESLNSHL VVGLITETVN IADAVKSCKI TTKECEFQTW EKTLEASEIL GMNVGFLRIR  480
VRRLASLAAE SLQVAASFKK VTNVPW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna15016.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011459608.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X1
TrEMBLA0A2P6PYB23e-99A0A2P6PYB2_ROSCH; Putative transcription factor B3-Domain family
STRINGXP_004293243.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3385522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.13e-33B3 family protein