PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna14981.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | CO-like | ||||||||
Protein Properties | Length: 313aa MW: 34506.7 Da PI: 6.7558 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 28 | 4.4e-09 | 7 | 46 | 4 | 37 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 + C+ +++ ++lfC+ ++ +lC +C +++H H mrna14981.1-v1.0-hybrid 7 KLCDSCKSATATLFCRADSAFLCINCDTKIHAAnklasrH 46 68*****************************554455555 PP | |||||||
2 | zf-B_box | 28.9 | 2.3e-09 | 49 | 94 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 + C+ +e+ +++ C+ ++ lC +C e+H+ H++vp+ mrna14981.1-v1.0-hybrid 49 VWLCEVCEQAPAHVTCKADDATLCVTCDREIHSAnplsrrHERVPV 94 679*****************************66899999*99986 PP | |||||||
3 | CCT | 70.1 | 5.8e-24 | 251 | 294 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++ mrna14981.1-v1.0-hybrid 251 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 294 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 1.9E-14 | 4 | 51 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.808 | 4 | 51 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.0E-6 | 7 | 46 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.49E-9 | 8 | 51 | No hit | No description |
PROSITE profile | PS50119 | 10.836 | 47 | 94 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.6E-7 | 49 | 94 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 5.25E-9 | 50 | 94 | No hit | No description |
SMART | SM00336 | 3.6E-10 | 52 | 94 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 4.4E-18 | 251 | 293 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.787 | 251 | 293 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0007010 | developmental stage | whole plant fruit ripening stage | ||||
PO:0007027 | developmental stage | whole plant fruit formation stage 70% to final size |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MASMASKLCD SCKSATATLF CRADSAFLCI NCDTKIHAAN KLASRHARVW LCEVCEQAPA 60 HVTCKADDAT LCVTCDREIH SANPLSRRHE RVPVAPFYDS LNSGKSDAAA VNLLDDRYLS 120 DGETTEAEAA SWLLPNPKDL NSGQYVFSDM DSYLDLDYGT PADPKTEAQE QNSSATDGVV 180 PVQSKSAQPQ SFEMELPGSK PFIYLSQSVS SSPLDVSIVP DGNMSDPYPK SISSAVDQLS 240 HPTVQISSAD REARVLRYRE KRKNRKFEKT IRYASRKAYA ETRPRIKGRF AKRTEVEIEA 300 ERLCRYGVVP SF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna14981.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU939303 | 6e-63 | EU939303.1 Prunus persica CONSTANS-like protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004291989.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 4 | ||||
Swissprot | Q940T9 | 1e-123 | COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4 | ||||
TrEMBL | A0A2P6PY47 | 0.0 | A0A2P6PY47_ROSCH; Putative transcription factor C2C2-CO-like family | ||||
STRING | XP_004291989.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1302 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24930.1 | 1e-122 | CONSTANS-like 4 |
Link Out ? help Back to Top | |
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Phytozome | mrna14981.1-v1.0-hybrid |