PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna14932.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family FAR1
Protein Properties Length: 661aa    MW: 75858.8 Da    PI: 7.0638
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna14932.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR171.71.7e-2240125290
                     FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 
                               Yn+YA + GFs+rk k ++  +n+   +r++ Cskeg++ +e+   e ++ +r  trtgCka+++ + e dgkw++ +++  HnH
  mrna14932.1-v1.0-hybrid  40 LYNTYAFKKGFSIRKGKVRRDAQNK-LRQRDYFCSKEGFPLDEEVG-EAKKVRRLDTRTGCKAMVRFNVE-DGKWRIVQFNPVHNH 122
                              7*******************96666.****************9999.99999*****************9.*************** PP

                     FAR1  88 ela 90 
                              e+a
  mrna14932.1-v1.0-hybrid 123 EFA 125
                              986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.8E-2040125IPR004330FAR1 DNA binding domain
PfamPF105511.4E-31252346IPR018289MULE transposase domain
PROSITE profilePS5096610.089531567IPR007527Zinc finger, SWIM-type
PfamPF044341.8E-5540566IPR007527Zinc finger, SWIM-type
SMARTSM005754.8E-4542569IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009001anatomyfruit
PO:0007010developmental stagewhole plant fruit ripening stage
PO:0007027developmental stagewhole plant fruit formation stage 70% to final size
Sequence ? help Back to Top
Protein Sequence    Length: 661 aa     Download sequence    Send to blast
MDSGWQRNVL ENGDKEDTFG DGDELRVGTV VENENEAYEL YNTYAFKKGF SIRKGKVRRD  60
AQNKLRQRDY FCSKEGFPLD EEVGEAKKVR RLDTRTGCKA MVRFNVEDGK WRIVQFNPVH  120
NHEFAKPEER QFLRSSRHIS TVRAAIIGYN SSKVDASVRP TKTLSYLEKE MSSTDNAGFG  180
FTEKGVHDCL HRLKENMIGG ADGQSLLDYL KHQQLEDSSF FYSVKVDQYN RVTNFFWRDS  240
RSRLDYDCFG DVVLFDTTFR TKKYNLVCAP FVGVDHHWKN VLFGCAFLLD ESTDSFTWLF  300
ENFLESMGDK RPKTIFTDED NAMAKAIEVI LPGTHHRLCT WNISKNASQY LASHLANPEF  360
KECFNKCFHE CVAEAEFEAT WDDMVKKFNL ENDLWLKKLY LLRQKWSPAF SPDTFTANIG  420
CDQRGENIDT TFHQISTTTM DLIGLAQHYE KKTKVLRLAQ AEEDFRCKNG MPRLRVNTGI  480
FKHAAAEYTI KLYSFFENEI LSTFGVRMME VGNDGYQYVY EAVEEGHQRV YIIQYNSTTS  540
TICCSCKLFE SMGVLCRHAL KVLDLKNITS IPAQYIVKRW TRGAKNQNVM SSGLCEPSCE  600
RANSAQSLRL SELMQEGNNV FSIGSLCDSG TRIVKQKLVE AIKLLETDKE TTSMLGTSNK  660
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15259RKGKVRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna14932.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004289113.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBLA0A2P6RM480.0A0A2P6RM48_ROSCH; Putative transcription factor FAR family
STRINGXP_004289113.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-106FAR1-related sequence 5