PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna14885.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C3H
Protein Properties Length: 1597aa    MW: 174032 Da    PI: 4.857
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna14885.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.48.8e-0715741596326
                               S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH    3 telCrffartGtCkyGdrCkFaHg 26  
                               ++ C+ ++++G+Ck G++C++ H+
  mrna14885.1-v1.0-hybrid 1574 QRVCK-YYESGYCKKGASCSYLHP 1596
                               789**.8899*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM001510.0027317404IPR019835SWIB domain
SuperFamilySSF475924.58E-19321398IPR003121SWIB/MDM2 domain
Gene3DG3DSA:1.10.245.102.8E-24322402IPR003121SWIB/MDM2 domain
PfamPF022019.7E-14325397IPR003121SWIB/MDM2 domain
SMARTSM007193.0E-43459569IPR004343Plus-3 domain
PROSITE profilePS5136025.429459592IPR004343Plus-3 domain
SuperFamilySSF1590421.83E-30460588IPR004343Plus-3 domain
PfamPF031261.4E-22464567IPR004343Plus-3 domain
SuperFamilySSF552771.83E-15747803IPR003169GYF domain
CDDcd000724.77E-15750807No hitNo description
PROSITE profilePS5082913.619750804IPR003169GYF domain
SMARTSM004441.1E-14751806IPR003169GYF domain
PfamPF022137.7E-10752796IPR003169GYF domain
Gene3DG3DSA:3.30.1490.408.5E-16752804IPR003169GYF domain
PROSITE profilePS5010315.06515711596IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.98E-615711595IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-415741596IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-415751595IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1597 aa     Download sequence    Send to blast
MELQQVQVYK PALGEQTEQQ PEMMSVNQCQ SMGDLDDSQL VGAHEAAVDA VKEVRMGEVA  60
AEVKEATSSV GKKRRGRPPG PGRPKTTQVR KKNDEEDVCF ICFDGGSLVL CDRSALLVLM  120
SCSFPVIGLI VELETIALLN WMFLCDCYLL GDVLRRIIPH ASSATRPFSN QRLNGIAVGI  180
YVAAVRRRRI ICAILVRILC ARDVLKMLIT NAYEETKDSV EHAQVDFDDK SSWEYLFKVY  240
WILLKGQLSL TVDDLIKAKN PWKGAAVVAC PRGALGEVHV GHKTNDLGSL NSCMDLGAAN  300
SNGSNKRPRI GDGGMSSPEG MNWASKELLE FVAYMKNGDV SVLSQFGVQA LMLEYIKKNN  360
LRDPHRKCQI ICDTRLRNLF RKECVGHFEM LKLLEYHYLI KECSTAENNI GAGVLSAVAT  420
DMEIDGNYDN QLMMCSDKRR KTRKIDERVP STNPDAYAAI DAHNINLIYL RRNLLENLLD  480
DVDKFNERVV GSIVRIRISS SDQKHDSYRL VQVIGTNKVA EGYKVGTRTT DMKLEISNLD  540
KREVLPIDQI SDQEFSQDEC KRLRQSIKCG LIKRFTVGEI QDKAMALRAI RVNDCTLREL  600
VEKLQRLDSP EERQRRLGEV PEVHTDPEMD PSYESEDNAG EDNKLDGNVK TRRSVSGRKG  660
RESFSPQMEG GVSNNSGNKA QNNQLREALG INGLNTTTNQ ATPSSLVRCG GNDESAVELN  720
ISSEVASENL SVSFSAVMKA NLPVESFEME KIWHYQDPSG KIQGPFAMVQ LCKWDTTGVF  780
PPDHRIWRIN EKQDDSILLT DALKGQYCKK PLLPHDSNIQ SQGLKVALDG TNSGLDGRWN  840
NSINATPIDG KKVEESWNTK KDGQIFQNSG NSEVVRSSTP ADAVNSNEKK NGEAHNSGST  900
EVLWSSTPAD AVNSNEKQTG THNSCSTTTE VARSSTPADA VNSDEKQTGF HLQGCDSVKI  960
DTSLSNQPQE CSSLTSPVLS VKPYETLSHQ EGEGTTENNS NQKNGSVDWR QNTQDQMNNE  1020
QGNENRSDSE GQSVQSSAQN WTHPPASSPS NGCDFTSDFV PVAKTFETSE QDERELDFPE  1080
FPSPTPKRSN GDSQGQASEH NQSLSSNLAV QDGGHSWSDS NLVGGGEQLQ KVAGDWGGYS  1140
PTPAKLSVEE WDSSLVSASS LKPSEIPSDF VAAPVSVNGQ LTEPIPSHPT SNASSWQEIL  1200
TETNEFCTLA ADESVSDLLA EVEAMESLCG LATPTSIMHC GGEFTEGSKN DSCCSVEGFS  1260
PAPEPGKGDA LSSTCDLQLP SEAMVTDEPL GVSQASILDL QQMSGVCSST NPELQGDIKP  1320
SDVAVKELEA NVSVNQLEAG EIKTAAPSKE CWDMSSTDDP WKARLESTGT SIEAVQGNTN  1380
AKWEGSDPGG TKVLGLQQMT GVLSSKSTEA ERKPSNVSVN QLEANVSVNQ LEPGEISMTA  1440
PSKESWDMST TDNPWKARLE SRDASCEAIQ GNVNAGWGGD RGSTNRSWGG PDPGSANVGW  1500
RGGQGSIQGN TVINSGAPAG GMWEGHQSRY GGDRRGRGFP NRDVGFGRGR FAGDRQASYG  1560
NRNGGSLRQP PRGQRVCKYY ESGYCKKGAS CSYLHP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna14885.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004287837.10.0PREDICTED: zinc finger CCCH domain-containing protein 44
TrEMBLA0A2P6RLZ30.0A0A2P6RLZ3_ROSCH; Putative transcription factor C3H family
STRINGXP_004287837.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14351523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51120.11e-124DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding