PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna14875.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | DBB | ||||||||
Protein Properties | Length: 187aa MW: 20516.2 Da PI: 7.1865 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 22.6 | 2.1e-07 | 4 | 33 | 5 | 34 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeH 34 C+ +e+ ++ fC ++ lC+ C ++ H mrna14875.1-v1.0-hybrid 4 LCDACESAAAIVFCAADEAALCRACDEKVH 33 7**************************998 PP | |||||||
2 | zf-B_box | 27.1 | 8.9e-09 | 53 | 91 | 3 | 37 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 ++C+ +e+ ++ ++Ce +++ lC +C + H g H mrna14875.1-v1.0-hybrid 53 VPRCDICENAPAFFYCEIDGSSLCLQCDMVVHVGgkrtH 91 689**************************9996545555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 1.8E-8 | 1 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.239 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.59E-6 | 3 | 45 | No hit | No description |
Pfam | PF00643 | 7.9E-6 | 3 | 34 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 7.3E-12 | 51 | 96 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 8.731 | 51 | 96 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 9.6E-7 | 53 | 91 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.24E-7 | 54 | 84 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0010100 | Biological Process | negative regulation of photomorphogenesis | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0070370 | Biological Process | cellular heat acclimation | ||||
GO:0071483 | Biological Process | cellular response to blue light | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root | ||||
PO:0007134 | developmental stage | sporophyte vegetative stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MRTLCDACES AAAIVFCAAD EAALCRACDE KVHLCNKLAS RHVRVGLATP SAVPRCDICE 60 NAPAFFYCEI DGSSLCLQCD MVVHVGGKRT HGRYLVLRQR VQFPGDKPSS NGEDPASQPP 120 IDQGETRRVQ HQQPRMTIGD NHQNHRASPV RLADANDDGH VKMDNKLIDL NMKPNRMHGQ 180 ASKEDQ* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna14875.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU815827 | 7e-46 | GU815827.1 Fragaria x ananassa clone ChFaM083 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004287831.1 | 1e-137 | PREDICTED: B-box zinc finger protein 19-like | ||||
Swissprot | C0SVM5 | 2e-74 | BBX19_ARATH; B-box zinc finger protein 19 | ||||
TrEMBL | A0A2P6RLZ4 | 1e-133 | A0A2P6RLZ4_ROSCH; Putative transcription factor interactor and regulator Znf-B family | ||||
STRING | XP_004287831.1 | 1e-136 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2734 | 33 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38960.1 | 9e-77 | DBB family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna14875.1-v1.0-hybrid |