PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna14767.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB_related
Protein Properties Length: 127aa    MW: 14539.7 Da    PI: 9.8037
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna14767.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.41.4e-071457344
                             SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
          Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                              WT+   +l+ +a + +  +   +W++Ia+ +g g t++++k  +
  mrna14767.1-v1.0-hybrid 14 TWTAKQTKLFENALAIYDQEtndRWHKIAKIVG-GTTEEEVKRQY 57
                             7*****************99*************.********877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.3661065IPR017884SANT domain
SMARTSM007171.5E-71163IPR001005SANT/Myb domain
SuperFamilySSF466891.33E-101369IPR009057Homeodomain-like
PfamPF002491.5E-51457IPR001005SANT/Myb domain
CDDcd001673.02E-61457No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MVSNKLSYPD SSSTWTAKQT KLFENALAIY DQETNDRWHK IAKIVGGTTE EEVKRQYEIL  60
VHDINCIESG KVPLPKYRKV GESKISNQEK RMITNCKKGT AEEFKAIKTP SGIRLSTNFL  120
MKWIYH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-251192787RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna14767.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011462882.11e-62PREDICTED: protein RADIALIS-like 3
SwissprotF4JVB82e-29RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A251NEW74e-44A0A251NEW7_PRUPE; Uncharacterized protein
STRINGXP_004287896.12e-61(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.19e-32RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]