PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna14750.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | MYB_related | ||||||||
Protein Properties | Length: 208aa MW: 23453 Da PI: 9.9103 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.3 | 9.7e-10 | 140 | 183 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +WT+ +++ +a +++ ++ +W ++ar +g g++++++k ++ mrna14750.1-v1.0-hybrid 140 SWTPKQNKQFEKALALYDKDtpdRWQKVARAVG-GKSAEEVKRHY 183 7********************************.**********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 11.224 | 136 | 191 | IPR017884 | SANT domain |
SMART | SM00717 | 8.4E-9 | 137 | 189 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.55E-12 | 139 | 195 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.6E-5 | 140 | 193 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.5E-7 | 140 | 183 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.90E-7 | 141 | 183 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MAVEACDDGF SEALVKCKRS ADISKRLIHP TVKSKGETIT KVQCMTPLPL SIHTIGTKSK 60 QMYVVMKDVD ENLEKKAIRR NQTPVPDPKV QQYQTPKAKT GDLLTCFFLK LKHNHQTLFP 120 SKCSLLMASN SLSSRSSSSS WTPKQNKQFE KALALYDKDT PDRWQKVARA VGGKSAEEVK 180 RHYEILIEDV KHIESGRIPY PDYRNSD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 5e-32 | 133 | 206 | 3 | 76 | RADIALIS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna14750.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF154 | 34 | 280 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.1 | 1e-31 | RAD-like 6 |
Link Out ? help Back to Top | |
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Phytozome | mrna14750.1-v1.0-hybrid |