PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna14681.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | NF-YA | ||||||||
Protein Properties | Length: 341aa MW: 37231.8 Da PI: 8.1341 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 103.4 | 2.1e-32 | 169 | 225 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQyq+Il+RRq+Rak+e ekkl +k rkpylheSRh+hA+rR+Rg+gGrF mrna14681.1-v1.0-hybrid 169 QEPVYVNAKQYQGILRRRQARAKAELEKKL-IKVRKPYLHESRHQHAMRRARGTGGRF 225 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 8.0E-36 | 167 | 228 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 37.003 | 168 | 228 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 3.4E-28 | 170 | 225 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 3.8E-24 | 171 | 193 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 173 | 193 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 3.8E-24 | 202 | 225 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010262 | Biological Process | somatic embryogenesis | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0055046 | Biological Process | microgametogenesis | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MQPKSETENQ IRVDHHTIPP STVSSQPWWR TGYNPTSPTV TGRNVSTSSS FEPPKSHSES 60 SDDKSVSDDG SNEDDDNAKE SHLTSPLSVG NKNQDLQLDS STVPTVHDEG VTHPPQLELI 120 GHSIACASNP YQDPYYAGMM AAYGHQPLGY PPFVGMPHAR MPLPLEMAQE PVYVNAKQYQ 180 GILRRRQARA KAELEKKLIK VRKPYLHESR HQHAMRRARG TGGRFAKKTN GDTLKTGGQE 240 KASHSSQSAS SSGSEPLPSD SAETWNSSIS QQEASRPQVH DAYATNNYVN GSGCYQTHGG 300 LQASLYRTYS GKRGDEGDCM GQQRGSISSN QGSQRRLAIQ * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 6e-19 | 169 | 233 | 2 | 66 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna14681.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004291784.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-1 | ||||
Refseq | XP_011459505.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-1 | ||||
Swissprot | Q945M9 | 9e-81 | NFYA9_ARATH; Nuclear transcription factor Y subunit A-9 | ||||
TrEMBL | A0A2P6QFL8 | 0.0 | A0A2P6QFL8_ROSCH; Putative transcription factor Hap2/NF-YA family | ||||
STRING | XP_004291783.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4012 | 34 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20910.1 | 2e-77 | nuclear factor Y, subunit A9 |
Link Out ? help Back to Top | |
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Phytozome | mrna14681.1-v1.0-hybrid |
Publications ? help Back to Top | |||
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