PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna14681.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NF-YA
Protein Properties Length: 341aa    MW: 37231.8 Da    PI: 8.1341
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna14681.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.42.1e-32169225158
                CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                              +ep+YVNaKQyq+Il+RRq+Rak+e ekkl +k rkpylheSRh+hA+rR+Rg+gGrF
  mrna14681.1-v1.0-hybrid 169 QEPVYVNAKQYQGILRRRQARAKAELEKKL-IKVRKPYLHESRHQHAMRRARGTGGRF 225
                              69****************************.**************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005218.0E-36167228IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.003168228IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.4E-28170225IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.8E-24171193IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860173193IPR018362CCAAT-binding factor, conserved site
PRINTSPR006163.8E-24202225IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010262Biological Processsomatic embryogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0055046Biological Processmicrogametogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MQPKSETENQ IRVDHHTIPP STVSSQPWWR TGYNPTSPTV TGRNVSTSSS FEPPKSHSES  60
SDDKSVSDDG SNEDDDNAKE SHLTSPLSVG NKNQDLQLDS STVPTVHDEG VTHPPQLELI  120
GHSIACASNP YQDPYYAGMM AAYGHQPLGY PPFVGMPHAR MPLPLEMAQE PVYVNAKQYQ  180
GILRRRQARA KAELEKKLIK VRKPYLHESR HQHAMRRARG TGGRFAKKTN GDTLKTGGQE  240
KASHSSQSAS SSGSEPLPSD SAETWNSSIS QQEASRPQVH DAYATNNYVN GSGCYQTHGG  300
LQASLYRTYS GKRGDEGDCM GQQRGSISSN QGSQRRLAIQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A6e-19169233266NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna14681.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004291784.10.0PREDICTED: nuclear transcription factor Y subunit A-1
RefseqXP_011459505.10.0PREDICTED: nuclear transcription factor Y subunit A-1
SwissprotQ945M99e-81NFYA9_ARATH; Nuclear transcription factor Y subunit A-9
TrEMBLA0A2P6QFL80.0A0A2P6QFL8_ROSCH; Putative transcription factor Hap2/NF-YA family
STRINGXP_004291783.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40123461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20910.12e-77nuclear factor Y, subunit A9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]