PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna14644.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

SRS

Protein Properties

Length: 566aa MW: 60854.8 Da PI: 8.3757

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna14644.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	202.1	1.6e-62	107	274	5	154
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrel.kskkqsalss 88 + +CqdCGnqakkdC+h+RCRtCCksrgfdCathvks Wvpa +rrerq ++aaa s+a++s+ +++++k++r + +++ + ++ mrna14644.1-v1.0-hybrid 107 ALTCQDCGNQAKKDCSHRRCRTCCKSRGFDCATHVKSSWVPAVRRRERQLMAAAAGSSASTSHtTSSNAKKPRLVtSRNTTPSHTN 192 679*******************************************99988877666555537788888887733444556677 PP DUF702 89 tklssaeskkeletss...............lPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154 + +s+++++++ +ts+ +P +v+++avf+cvrv++vdd ge+e+aY+++v+i+GhvfkG+LydqG ++ mrna14644.1-v1.0-hybrid 193 SATSNTTPPRSYDTSHttskhqhhdggfpdtMPGQVQAPAVFKCVRVTAVDDgGEDEYAYHAVVKINGHVFKGFLYDQGRDH 274 78899999999999989999****************************899**********************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	7.0E-58	108	273	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	2.8E-25	109	151	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	7.1E-27	224	271	IPR006511	Lateral Root Primordium type 1, C-terminal
Pfam	PF04827	7.3E-11	338	375	IPR006912	Harbinger transposase-derived protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0048364	Biological Process	root development
GO:0016788	Molecular Function	hydrolase activity, acting on ester bonds
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 566 aa Download sequence Send to blast
MGMLGLRDVF LVAPAAASYH HHHQDLLSSH HNSLNASNPA TALGVGVMND DSDDHNMMSG 60 RNRNCGGGGV QLWQQPTQQQ QHQLFLKKNQ NLHLMVQAGG GASAASALTC QDCGNQAKKD 120 CSHRRCRTCC KSRGFDCATH VKSSWVPAVR RRERQLMAAA AGSSASTSHT TSSNAKKPRL 180 VTSRNTTPSH TNSATSNTTP PRSYDTSHTT SKHQHHDGGF PDTMPGQVQA PAVFKCVRVT 240 AVDDGGEDEY AYHAVVKING HVFKGFLYDQ GRDHHGFPNI SHLHLGGGSG GGGGGATSST 300 PTGRNEGAPI LDPSDAYAAA AAASTSGGLL LGGSTFFARI AIVRGPARGW NMEDLQYIMT 360 TCIILHNMIV DDEHDEIEDN HEVDPDEVLT RPRRAKIYDH YKVYHLVERD PPALEEFMRQ 420 YQQVRTSLLS PPYVTGEGAP PLQQTLAASP TTFHPQRIRR IPVFREAAGV RWGGGAPSPA 480 PYDGEQREIR TLRRCGRPAD VSPLSTVRLR RRGVSTPVAS SSVPDHFSSP ASPPNSSFPA 540 RSILFEVLGD LAGKLEFGGL AGEGK*

Sequence ? help Back to Top

Protein Sequence Length: 566 aa Download sequence Send to blast

MGMLGLRDVF LVAPAAASYH HHHQDLLSSH HNSLNASNPA TALGVGVMND DSDDHNMMSG  60
RNRNCGGGGV QLWQQPTQQQ QHQLFLKKNQ NLHLMVQAGG GASAASALTC QDCGNQAKKD  120
CSHRRCRTCC KSRGFDCATH VKSSWVPAVR RRERQLMAAA AGSSASTSHT TSSNAKKPRL  180
VTSRNTTPSH TNSATSNTTP PRSYDTSHTT SKHQHHDGGF PDTMPGQVQA PAVFKCVRVT  240
AVDDGGEDEY AYHAVVKING HVFKGFLYDQ GRDHHGFPNI SHLHLGGGSG GGGGGATSST  300
PTGRNEGAPI LDPSDAYAAA AAASTSGGLL LGGSTFFARI AIVRGPARGW NMEDLQYIMT  360
TCIILHNMIV DDEHDEIEDN HEVDPDEVLT RPRRAKIYDH YKVYHLVERD PPALEEFMRQ  420
YQQVRTSLLS PPYVTGEGAP PLQQTLAASP TTFHPQRIRR IPVFREAAGV RWGGGAPSPA  480
PYDGEQREIR TLRRCGRPAD VSPLSTVRLR RRGVSTPVAS SSVPDHFSSP ASPPNSSFPA  540
RSILFEVLGD LAGKLEFGGL AGEGK*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna14644.1-v1.0-hybrid

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004293145.1	0.0	PREDICTED: protein LATERAL ROOT PRIMORDIUM 1
Swissprot	Q94CK9	3e-74	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A2P6QF71	1e-138	A0A2P6QF71_ROSCH; Putative transcription factor STY-LRP1 family
STRING	XP_004293145.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6504	33	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	1e-60	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	mrna14644.1-v1.0-hybrid

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]