PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna14635.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family HB-other
Protein Properties Length: 420aa    MW: 46960.2 Da    PI: 7.955
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna14635.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.21.3e-082293057
                             HHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
                 Homeobox 30 reeLAkklgLterqVkvWFqNrRakekk 57
                             + +LA++l L+e+q++ WF+ rR k+k+
  mrna14635.1-v1.0-hybrid  2 KSQLAEELALSEKQISGWFCHRRLKDKR 29
                             579***********************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000861.97E-5129No hitNo description
PROSITE profilePS5007111.321130IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.0E-8229IPR009057Homeodomain-like
SuperFamilySSF466891.28E-6238IPR009057Homeodomain-like
PfamPF000463.8E-6229IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MKSQLAEELA LSEKQISGWF CHRRLKDKRL SRDETCANGR QDRSSGVIQD RASGLGQDSC  60
GSTKHGDYRY VDPREVESRR LSGYDFPAAD LTRENRIHYT ERVSMDNTSS ESSSSLQDRF  120
HTQTEDPYDM ETSRYVTDNG VFSPLNSKGT ENMGYKPSGY LKVKGEIENA AITAVKRQLG  180
RHFREDGPPL GVEFDPLPPG AFETPIMDPV QELSVGGDAA ILVSPDTSGV KRQSSPSTRY  240
EVYNSNLSSH GLHIHQEKRG IMHGVDMVER KPRKQLRQKS TYLKETNPSA GKNSSLDMYD  300
KFPGGMPGYN GNRKNRMSSK HGHRGRKIIS ETTEPWPNES DKVCSPNIGQ RGDYFKSKAS  360
NSIVKHSETH DTERGLYTMI PREENVDGEC KAVKDYPLRV TMTDEMAVSF NLGGTMVIS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna14635.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011459465.10.0PREDICTED: uncharacterized protein LOC101305913 isoform X1
TrEMBLA0A2P6QF750.0A0A2P6QF75_ROSCH; Putative transcription factor Homobox-WOX family
STRINGXP_004291739.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57923051
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03250.11e-58HB-other family protein