PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna14635.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

HB-other

Protein Properties

Length: 420aa MW: 46960.2 Da PI: 7.955

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna14635.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	26.2	1.3e-08	2	29	30	57
HHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 30 reeLAkklgLterqVkvWFqNrRakekk 57 + +LA++l L+e+q++ WF+ rR k+k+ mrna14635.1-v1.0-hybrid 2 KSQLAEELALSEKQISGWFCHRRLKDKR 29 579***********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00086	1.97E-5	1	29	No hit	No description
PROSITE profile	PS50071	11.321	1	30	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	4.0E-8	2	29	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.28E-6	2	38	IPR009057	Homeodomain-like
Pfam	PF00046	3.8E-6	2	29	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence Send to blast
MKSQLAEELA LSEKQISGWF CHRRLKDKRL SRDETCANGR QDRSSGVIQD RASGLGQDSC 60 GSTKHGDYRY VDPREVESRR LSGYDFPAAD LTRENRIHYT ERVSMDNTSS ESSSSLQDRF 120 HTQTEDPYDM ETSRYVTDNG VFSPLNSKGT ENMGYKPSGY LKVKGEIENA AITAVKRQLG 180 RHFREDGPPL GVEFDPLPPG AFETPIMDPV QELSVGGDAA ILVSPDTSGV KRQSSPSTRY 240 EVYNSNLSSH GLHIHQEKRG IMHGVDMVER KPRKQLRQKS TYLKETNPSA GKNSSLDMYD 300 KFPGGMPGYN GNRKNRMSSK HGHRGRKIIS ETTEPWPNES DKVCSPNIGQ RGDYFKSKAS 360 NSIVKHSETH DTERGLYTMI PREENVDGEC KAVKDYPLRV TMTDEMAVSF NLGGTMVIS*

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence Send to blast

MKSQLAEELA LSEKQISGWF CHRRLKDKRL SRDETCANGR QDRSSGVIQD RASGLGQDSC  60
GSTKHGDYRY VDPREVESRR LSGYDFPAAD LTRENRIHYT ERVSMDNTSS ESSSSLQDRF  120
HTQTEDPYDM ETSRYVTDNG VFSPLNSKGT ENMGYKPSGY LKVKGEIENA AITAVKRQLG  180
RHFREDGPPL GVEFDPLPPG AFETPIMDPV QELSVGGDAA ILVSPDTSGV KRQSSPSTRY  240
EVYNSNLSSH GLHIHQEKRG IMHGVDMVER KPRKQLRQKS TYLKETNPSA GKNSSLDMYD  300
KFPGGMPGYN GNRKNRMSSK HGHRGRKIIS ETTEPWPNES DKVCSPNIGQ RGDYFKSKAS  360
NSIVKHSETH DTERGLYTMI PREENVDGEC KAVKDYPLRV TMTDEMAVSF NLGGTMVIS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna14635.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011459465.1	0.0	PREDICTED: uncharacterized protein LOC101305913 isoform X1
TrEMBL	A0A2P6QF75	0.0	A0A2P6QF75_ROSCH; Putative transcription factor Homobox-WOX family
STRING	XP_004291739.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5792	30	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	1e-58	HB-other family protein

Link Out ? help Back to Top
Phytozome	mrna14635.1-v1.0-hybrid