PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna14621.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family WOX
Protein Properties Length: 297aa    MW: 32471.8 Da    PI: 7.0702
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna14621.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.46e-192586257
                             T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                 Homeobox  2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                             ++R+t+t++q+++L+el+++   r psae+++++  +l    +++ ++V++WFqN++a+e++
  mrna14621.1-v1.0-hybrid 25 STRWTPTTDQIRILKELYYNkgVRSPSAEQIQRICLQLkrygKIEGKNVFYWFQNHKARERQ 86
                             58****************97689*************************************97 PP
2Wus_type_Homeobox111.54.5e-362488265
        Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                             ++tRWtPt++Qi+iL+ely+ +G+r+P++e+iqri  +L++yGkie+kNVfyWFQN+kaRerqk+
  mrna14621.1-v1.0-hybrid 24 SSTRWTPTTDQIRILKELYYnKGVRSPSAEQIQRICLQLKRYGKIEGKNVFYWFQNHKARERQKK 88
                             789***************9779*****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.02E-111991IPR009057Homeodomain-like
PROSITE profilePS5007110.1222187IPR001356Homeobox domain
SMARTSM003890.00182391IPR001356Homeobox domain
CDDcd000865.43E-62688No hitNo description
Gene3DG3DSA:1.10.10.602.1E-62686IPR009057Homeodomain-like
PfamPF000461.9E-162686IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0080166Biological Processstomium development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MEPQPTEDGN RAAGGSATMV CRQSSTRWTP TTDQIRILKE LYYNKGVRSP SAEQIQRICL  60
QLKRYGKIEG KNVFYWFQNH KARERQKKRF TADVHVPMQR SGLVGNANCT NWKPDDQYMN  120
MNNKYSNICQ GVSSAPASAS SAGGVIAFNG QMGNCGGYGS MNMEKSFRDC SISAGEGTGT  180
TAVGVGGSLG HNFGSWVGGG VDPYSCSSYT SGTSTTFFDM KEQTFMEQEE EYHQEIETLP  240
LFPMHGEEFF GNIKTSSEGG SGYGYYSGSW GGYNGGARTS LELSLNSYGY NTLNYH*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). May induce shoot stem cells activity in order to maintain the stem cell identity (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00265DAPTransfer from AT2G17950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna14621.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004289091.10.0PREDICTED: protein WUSCHEL
SwissprotQ6YBV18e-70WUS_ANTMA; Protein WUSCHEL
TrEMBLA0A2P6RLV61e-145A0A2P6RLV6_ROSCH; Putative transcription factor Homobox-WOX family
STRINGXP_004289091.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82413345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.12e-38WOX family protein