PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna14608.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 322aa    MW: 35480.6 Da    PI: 7.4991
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna14608.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.46.9e-104493154
                             CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                             r++ +  rE+ RRd++N+ f eL   l ++     +K++Ka+iL+ +++ +k+L
  mrna14608.1-v1.0-hybrid 44 RKVQKADREKLRRDKLNEHFLELGNTLDPD----RPKNDKATILTDTIQVLKDL 93
                             5677889********************997....79***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.1414393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.28E-1343111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-1243115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.05E-84493No hitNo description
PfamPF000101.2E-74493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-74999IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MDQWKGDHFA GVSAPSSAQH LPLPPVNCDR KRADVETKDP VSARKVQKAD REKLRRDKLN  60
EHFLELGNTL DPDRPKNDKA TILTDTIQVL KDLTSDVNKL KSECATLNDE SRELTLEKNE  120
LREEKASLKS DIENLNAQYQ QRVRVMFPWG AMDPSVVMAP PYSYPMPVAV PPGPIPMHPS  180
LQPFPYYQTQ NPATVPNPCP TFVSYPTPIN PAVEQPLAQP QYASVSHVSS KQDSKSKSSD  240
HQRGGNAERC DDSNEVATEL VLKMPGSSAH QESCCGAKKG KQSQRKDRNI TDGSSSSRYS  300
SSQVVQESSS NSVGDIPKTN K*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna14608.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU2887580.0KU288758.1 Fragaria vesca subsp. americana clone fosmid f01H23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004287813.10.0PREDICTED: transcription factor bHLH121
SwissprotQ9LT234e-84BH121_ARATH; Transcription factor bHLH121
TrEMBLA0A2P6RLY40.0A0A2P6RLY4_ROSCH; Putative transcription factor bHLH family
STRINGXP_004287813.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22823376
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.15e-75bHLH family protein
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]